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Resource Category : Webserver -> Expression -> Gene Set Analysis

  1. Title of the Paper : TransFind--predicting transcriptional regulators for gene sets (View at PubMed)
    Contributors : Kielbasa, S. M.; Klein, H.; Roider, H. G.; Vingron, M.; Bluthgen, N.
    Address : Max Planck Institute for Molecular Genetics, Ihnestrasse 73, D-14195 Berlin, Germany.
    Publication Name : Nucleic Acids Res
    Volume : 38
    Issue : Web Server issue
    Pages : W275-80
    Publication Year : 2010
    ISSN : 1362-4962 (Electronic) 0305-1048 (Linking)
    Language : English
    Abstract : The analysis of putative transcription factor binding sites in promoter regions of coregulated genes allows to infer the transcription factors that underlie observed changes in gene expression. While such analyses constitute a central component of the in-silico characterization of transcriptional regulatory networks, there is still a lack of simple-to-use web servers able to combine state-of-the-art prediction methods with phylogenetic analysis and appropriate multiple testing corrected statistics, which returns the results within a short time. Having these aims in mind we developed TransFind, which is freely available at