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  1. fRNAdb (View Publication)
    Full Name of the Resource : Functional RNA Database: noncoding transcripts that affect gene expression
    Resource Category : Databases -> RNA -> RNA Sequence, Structure and Functions

    Brief Description : Functional RNA Database (fRNAdb) is a database service that hosts a large collection of non-coding transcripts including annotated/un-annotated sequences from H-inv database, NONCODE, and RNAdb. A set of computational sequence analyses are performed over these registered sequences. The analyses include RNA secondary structure motif discovery, EST support, finding cis-regulatory elements, sequence homology search, etc. The fRNAdb provides an efficient interface to help users filter out particular transcripts that match their own criteria to sort out functional RNA candidates.
    Subject Area : Functional RNA


    Institute/s :
    National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo, Japan
    Address of Institute/s :
    National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064
    Country : Japan

    Associated Institutes :

    • National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064
    • Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012
    • INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075
    • Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan

    Associated Country : Japan


    Authors/Contributors : Toutai Mituyama
    Contact Email : mituyama-toutai@aist.go.jp
    Year : 2008
    Language : English

    Keywords : Base Sequence; Databases, Nucleic Acid; Genomics; Internet; MicroRNAs / physiology; RNA, Messenger / chemistry; RNA, Untranslated / chemistry / physiology; User-Computer Interface