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Showing search results (1–2 of 2):

  1. YGOB
    Full Name of the Resource : Yeast gene order browser
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Fungal Genome Gatabases

    Brief Description : Yeast Gene Order Browser
    Subject Area : The Yeast Gene Order Browser (YGOB) is an online tool designed to facilitate the comparative genomic visualization and appraisal of synteny within and between the genomes of seven hemiascomycete yeast species. Three of these genomes are polyploid, and hence contain intra-genomic syntenic regions, the correct assembly of which is a particular success of YGOB. Designed to accurately assemble, display and score gene order relationships, YGOB is both an interactive tool for browsing genomic data, and a software engine that can be used for evolutionary analyses on a whole-genome scale. Underlying the online interface is the YGOB database, which consists of homology assignments across the species, extensively curated based on sequence similarity and novelly, an appraisal of genomic context (synteny) in multiple genomes. Version 1.0 of YGOB incorporates genome data from Saccharomyces cerevisiae, Candida glabrata, S. castellii, Ashbya gossypii, Kluyveromyces lactis, K. waltii and S. kluyveri, but the system is scaleable to accommodate additional genomes


    Institute/s :
    Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Ireland
    Address of Institute/s :
    Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Dublin 2, Ireland
    Country : Ireland


    Authors/Contributors : Byrne K.P.
    Contact Email : kevin.byrne@tcd.ie
    Year : 2006
    Language : English

    Keywords : *Databases, Genetic; *Genome, Fungal; *Internet; *Polyploidy; Yeasts/*genetics



  2. YGOB
    Full Name of the Resource : Yeast gene order browser
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Yeasts

    Brief Description : The Yeast Gene Order Browser (YGOB) is an online tool designed to facilitate the comparative genomic visualization and appraisal of synteny within and between the genomes of seven hemiascomycete yeast species. Three of these genomes are polyploid, and hence contain intra-genomic syntenic regions, the correct assembly of which is a particular success of YGOB. Designed to accurately assemble, display and score gene order relationships, YGOB is both an interactive tool for browsing genomic data, and a software engine that can be used for evolutionary analyses on a whole-genome scale. Underlying the online interface is the YGOB database, which consists of homology assignments across the species, extensively curated based on sequence similarity and novelly, an appraisal of genomic context (synteny) in multiple genomes. Version 1.0 of YGOB incorporates genome data from Saccharomyces cerevisiae, Candida glabrata, S. castellii, Ashbya gossypii, Kluyveromyces lactis, K. waltii and S. kluyveri, but the system is scaleable to accommodate additional genomes
    Subject Area : Yeast Genome


    Institute/s :
    Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Dublin 2, Ireland.
    Country : Ireland

    Associated Institutes :

    • Department of Genetics, Smurfit Institute, University of Dublin, Trinity College Dublin 2, Ireland

    Associated Country : Ireland


    Authors/Contributors : Byrne K.P.
    Contact Email : kevin.byrne@tcd.ie
    Year : 2006
    Language : English