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  1. Xpro (View Publication)
    Full Name of the Resource : Eukaryotic protein-encoding DNA sequences, both intron-containing and intron-less genes
    Resource Category : Databases -> Nucleotide Sequence Databases -> Gene Structure, Introns and Exons, Splice Sites

    Brief Description : Xpro is a relational database that contains all the eukaryotic protein-encoding DNA sequences in GenBank. It provides detailed and comprehensive features about both the intron containing and the intron-less genes. In addition to the information found in the GenBank records, which includes properties such as sequence, position, length and description about introns, exons and protein coding regions, Xpro provides annotations on the splice sites motifs and intron phases. Furthermore, Xpro validates intron positions using alignment information between the records sequence and EST sequences found in dbEST. The entries in the XPro are also cross-referenced to SWISS-PROT/TrEMBL (http://www.ebi.ac.uk/trembl/index.html) and Pfam (http://www.sanger.ac.uk/Software/Pfam/) databases.
    Subject Area : Eukaryotic Protein-Encoding DNA sequences; GenBank


    Institute/s :
    Department of Biological Sciences, National University of Singapore, Singapore
    Address of Institute/s :
    Department of Biological Sciences, National University of Singapore, Singapore
    Country : Singapore

    Associated Institutes :

    • Department of Biochemistry
    • National University of Singapore, Singapore 119260
    • Department of Biological Sciences, National University of Singapore, Singapore 119260

    Associated Country : Singapore


    Authors/Contributors : Shoba Ranganathan
    Contact Email : shoba@bic.nus.edu.sg
    Year : 2004
    Language : English

    Keywords : Alternative Splicing/genetics; Animals; Computational Biology; *Databases, Genetic; *Eukaryotic Cells; Expressed Sequence Tags; *Genes; Humans; Information Storage and Retrieval; Internet; Introns/genetics; Proteins/*genetics; Reproducibility of Results; Sequence Homology