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  1. WhoGA
    Resource Category : Databases -> Plant Databases -> Rice

    Brief Description : The rice genome database WhoGA (Rice Whole Genome Annotation) is a rice integrated database with a browser for all the genomic information that have been accumulated from the large-scale rice genome analysis including cDNA analysis, genetic mapping, physical mapping and the ongoing rice genome sequencing project. A total of 481 Mbp of rice genomic sequence data (as of Sept. 2004) from 3,454 PAC/BAC and newly constructed fosmid clones has been incorporated in the database as a result of an extensive effort of the International Rice Genome Sequencing Project (IRGSP) to accelerate the completion of gettingthe genome sequence. Since the IRGSP comes very near to the goal ofcompletion, WhoGA, which serves as the central database of IRGSP, currently contains almost 370 Mbp of non-overlapping sequence corresponding to about 95% of the entire rice genome. The sequence data areintegrated with the genetic map, a YAC (yeast artificial chromosome)-based physical map, transcript map, PAC (P1-derived artificial chromosome) / BAC (bacterial artificial chromosome) contigs for each sequenced clone. This map-based information of the sequence data would be very useful in elucidating the structure and function of specific regions of the genome particularly those containing agronomically important gene

    Institute/s :
    Rice Genome Research Program (RGP), National Institute of Agrobiological Sciences / Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305, Japan
    Address of Institute/s :
    Rice Genome Research Program (RGP), National Institute of Agrobiological Sciences / Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305, Japan
    Country : Japan

    Associated Institutes :

    • Rice Genome Research Program (RGP), National Institute of Agrobiological Resources, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
    • Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, 446-1 Ippaizuka, Kamiyokoba, Tsukuba, Ibaraki 305-0854, Japan
    • Mitsubishi Space Software Co., Ltd, 1-17-15 Sengen, Tsukuba, Ibaraki 305-0047, Japan

    Associated Country : Japan


    Authors/Contributors : Katsumi Sakata; Baltazar A. Antonio; Yoshiyuki Mukai; Hideki Nagasaki; Yasumichi Sakai; Kazuyoshi Makino; Takuji Sasaki
    Contact Email : tsasaki@nias.affrc.go.jp
    Year : 1999


  2. WhoGA
    Resource Category : Databases -> Plant databases -> Rice


    Country : JAPAN


    Authors/Contributors : Katsumi Sakata;Baltazar A. Antonio1;Yoshiyuki Mukai1;Hideki Nagasaki1;Yasumichi Sakai;Kazuyoshi Makino;Takuji Sasaki
    Year : 1999
    Language : English