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  1. VIPERdb (View Publication)
    Full Name of the Resource : Virus particle explorer: Virus capsid structures
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Viral Genome Databases

    Brief Description : VIPERdb is a database for icosahedral virus capsid structures. The emphasis of the resource is on providing data from structural and energetic analyses on these systems, and high quality renderings for visual exploration. In addition, all virus capsids are placed in a single orientation convention, facilitating comparison between different structures. The web site includes powerful search utilities, links to other relevant databases, background information on virus capsid structure, and useful tools like the Oligomer Generator, which generates full or partial capsid structure from the deposited asymmetric unit. VIPERdb is accessible from http://viperdb.scripps.edu.
    Subject Area : Icosahedral Virus Capsid Structures


    Institute/s :
    Department of Molecular Biology, The Scripps Research Institute, USA
    Address of Institute/s :
    Department of Molecular Biology, The Scripps Research Institute, 10550 N. Torrey Pines Rd., La Jolla, CA 92130-1000
    Country : United States

    Associated Institutes :

    • Department of Molecular Biology, The Scripps Research Institute, 10550 N. Torrey Pines Rd., La Jolla, CA 92130-1000
    • Computational Visualization Center, University of Texas at Austin, Austin, TX, 78712-0027, USA

    Associated Country : USA


    Authors/Contributors : Reddy, V.S.
    Contact Email : reddyv@scripps.edu
    Year : 2006
    Language : English

    Keywords : Capsid/*chemistry/ultrastructure; Capsid Proteins/*chemistry; Computer Graphics; Database Management Systems; *Databases, Protein; Internet; User-Computer Interface


  2. VIPERdb
    Full Name of the Resource : Virus particle explorer: Virus capsid structures
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Viral Genome Databases

    Brief Description : VIPERdb is a database for icosahedral virus capsid structures. The emphasis of the resource is on providing data from structural and energetic analyses on these systems, and high quality renderings for visual exploration. In addition, all virus capsids are placed in a single orientation convention, facilitating comparison between different structures. The web site includes powerful search utilities, links to other relevant databases, background information on virus capsid structure, and useful tools like the ??Oligomer Generator??, which generates full or partial capsid structure from the deposited asymmetric unit. VIPERdb is accessible from http://viperdb.scripps.edu.
    Subject Area : Viral Capsid


    Institute/s :
    Department of Molecular Biology, The Scripps Research Institute,, La Jolla, CA
    Computational Visualization Center, University of Texas at Austin, Austin, TX, 78712-0027, USA

    Address of Institute/s :
    Department of Molecular Biology, The Scripps Research Institute, 10550 N. Torrey Pines Rd., La Jolla, CA 92130-1000 1Computational Visualization Center, University of Texas at Austin, Austin, TX, 78712-0027, USA
    Country : United States

    Associated Institutes :

    • Department of Molecular Biology, TPC-6 The Scripps Research Institute 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
    • Computational Visualization Center, University of Texas at Austin Austin, TX 78712, USA

    Associated Country : USA


    Authors/Contributors : Craig M. Shepherd; Ian A. Borelli; Gabriel Lander; Padmaja Natarajan; Vinay Siddavanahalli; Chandrajit Bajaj; John E. Johnson; Charles L. Brooks ; Vijay S. Reddy
    Contact Email : reddyv@scripps.edu
    Year : 2006
    Language : English