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  1. UCSC Archaeal Genome Browser
    Full Name of the Resource : Pyrococcus furiosus genome browser
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Archaea

    Brief Description : Now that a significant number of archaeal species have been sequenced, effective research and analysis tools are needed to collect and compare the diverse information available for any given locus. We have created a group of integrated genome browsers for all sequenced archaeal species using the feature-rich UCSC Genome Browser system. The browser flexibly displays any combination of features such as G/C content, gene and operon annotation from multiple sources, sequence motifs (i.e., promoters, Shine-Dalgarno, terminators), protein domains, non-coding RNA analyses, GO/COG/KEGG classification information, microarray expression data, multi-genome alignments, and protein conservation across phylogenetic and habitat categories. We continue to add new analyses, both generated within our group as well as those published by other groups. We strongly encourage submission of experimental and bioinformatic analyses from new contributors. The primary aims of this tool are to aid biological discovery and facilitate greater collaboration among the archaeal research community.
    Subject Area : Pyrococcus furiosus genomes


    Institute/s :
    Biomolecular Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Address of Institute/s :
    Biomolecular Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Country : United States

    Associated Institutes :

    • Biomolecular Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA

    Associated Country : USA


    Authors/Contributors : Patricia P. Chan; Andrew D. Holmes; Andrew M. Smith; Danny Tran ; Todd M. Lowe
    Contact Email : lowe@soe.ucsc.edu
    Year : 2006
    Language : English