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  1. Rfam (View Publication)
    Full Name of the Resource : Non-coding RNA families
    Resource Category : Databases -> RNA -> RNA Sequence, Structure and Functions

    Brief Description : Rfam is a collection of multiple sequence alignments and covariance models representing non-coding RNA families. Rfam is available on the web in the UK at http://www.sanger.ac.uk/Software/Rfam/ and in the US at http://rfam.wustl.edu/. These websites allow the user to search a query sequence against a library of covariance models, and view multiple sequence alignments and family annotation. The database can also be downloaded in flatfile form and searched locally using the INFERNAL package (http://infernal.wustl.edu/). The first release of Rfam (1.0) contains 25 families, which annotate over 50000 non-coding RNA genes in the taxonomic divisions of the EMBL nucleotide database.
    Subject Area : Non-Coding RNA


    Institute/s :
    The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.
    Address of Institute/s :
    The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK. sgj@sanger.ac.uk
    Country : United Kingdom

    Associated Institutes :

    • Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA0, United Kingdom
    • Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK
    • Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA

    Associated Country : United Kingdom; USA


    Authors/Contributors : Paul P. Gardner
    Contact Email : pg5@sanger.ac.uk
    Year : 2010
    Language : English

    Keywords : Animals; Databases, Nucleic Acid; Internet; RNA, Untranslated / chemistry / classification / genetics; Sequence Alignment; Software