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  1. RAP-DB (View Publication)
    Full Name of the Resource : Rice annotation project database
    Resource Category : Databases -> Plant Databases -> Rice

    Brief Description : With the completion of the rice genome sequencing, a standardized annotation is necessary so that the information from the genome sequence can be fully utilized in understanding the biology of rice and other cereal crops. An annotation jamboree was held in Japan with the aim of annotating and manually curating all the genes in the rice genome. Here we present the Rice Annotation Project Database (RAP-DB), which has been developed to provide access to the annotation data. The RAP-DB has two different types of annotation viewers, BLAST and BLAT search, and other useful features. By connecting the annotations to other rice genomics data, such as full-length cDNAs and Tos17 mutant lines, the RAP-DB serves as a hub for rice genomics. All of the resources can be accessed through http://rapdb.lab.nig.ac.jp/.
    Subject Area : Rice Genome Sequencing


    Institute/s :
    National Institute of Genetics, Japan
    Address of Institute/s :
    Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima, Shizuoka 411-8540, Japan
    Country : Japan

    Associated Institutes :

    • Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima, Shizuoka 411-8540, Japan
    • Tsukuba Division, Mitsubishi Space Software Co., Ltd., 1-6-1 Takezono, Tsukuba, Ibaraki 305-0032, Japan
    • Genome Research Department, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
    • Life Science Systems Division, Fujitsu Limited, 1-17-25 Shinkamata, Ota-ku, Tokyo 144-8588, Japan
    • Japan Biological Information Research Center, Japan Biological Informatics Consortium, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan
    • Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan

    Associated Country : Japan


    Authors/Contributors : Ohyanagi H.
    Contact Email : rap-db@lab.nig.ac.jp
    Year : 2006
    Language : English

    Keywords : Databases, Nucleic Acid; Genome, Plant; Genomics; Internet; Oryza sativa / genetics; User-Computer Interface