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  1. Plant MPSS
    Full Name of the Resource : Massively parallel signature sequencing of plant genes
    Resource Category : Databases -> Plant Databases -> Plant- General plant databases

    Brief Description : MPSS (Massively Parallel Signature Sequencing) is a sequencing-based technology that uses a unique method to quantify gene expression level, generating millions of short sequence tags per library. The Plant MPSS databases are the largest publicly available set of tag-based gene expression data. These databases provide MPSS data with a user-friendly interface for four organisms (Arabidopsis, rice, grape, and Magnaporthe grisea, the rice blast fungus). These data include mRNA data and we?re currently expanding a set of small RNA data. The databases are built on a common set of web interfaces and are equipped with various graphical and analytical tools that allow the user to retrieve and analyze the data. The sequencing depth provides a quantitative assessment of transcript abundance (i.e. the expression level of the corresponding gene), while greatly increasing the likelihood of discovering novel transcripts. The website, equipped with various graphical and analytical tools, is available at http://mpss.udel.edu

    Institute/s :
    Department of Plant and Soil Sciences and 2Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19714, USA
    Country : United States

    Associated Institutes :

    • Department of Plant and Soil Sciences, University of Delaware Newark, DE 19714, USA
    • Delaware Biotechnology Institute, University of Delaware Newark, DE 19714, USA

    Associated Country : USA


    Authors/Contributors : Meyers B.C.
    Contact Email : meyers@dbi.udel.edu
    Year : 2006
    Language : English


  2. Plant MPSS
    Resource Category : Databases -> Plant Databases -> General Plant Databases

    Brief Description : MPSS (Massively Parallel Signature Sequencing) is a sequencing-based technology that uses a unique method to quantify gene expression level, generating millions of short sequence tags per library. The Plant MPSS databases are the largest publicly available set of tag-based gene expression data. These databases provide MPSS data with a user-friendly interface for four organisms (Arabidopsis, rice, grape, and Magnaporthe grisea, the rice blast fungus). These data include mRNA data and we?re currently expanding a set of small RNA data. The databases are built on a common set of web interfaces and are equipped with various graphical and analytical tools that allow the user to retrieve and analyze the data. The sequencing depth provides a quantitative assessment of transcript abundance (i.e. the expression level of the corresponding gene), while greatly increasing the likelihood of discovering novel transcripts. The website, equipped with various graphical and analytical tools, is available at http://mpss.udel.edu

    Institute/s :
    Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19714, USA
    Address of Institute/s :
    Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19714, USA
    Country : United States

    Associated Institutes :

    • Department of Plant and Soil Sciences, University of Delaware Newark, DE 19714, USA
    • Delaware Biotechnology Institute, University of Delaware Newark, DE 19714, USA

    Associated Country : USA


    Authors/Contributors : Blake C. Meyers; Mayumi Nakano; Kan Nobuta; Kalyan Vemaraju; Shivakundan Singh Tej; Jeremy W. Skogen
    Contact Email : meyers@dbi.udel.edu
    Year : 2006