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  1. PhyloFacts (View Publication)
    Full Name of the Resource : Phylogenomic analysis of protein families
    Resource Category : Databases -> Protein Sequence Databases -> Protein Domain Databases (Protein Classification)

    Brief Description : The PhyloFacts resource contains pre-calculated structural and phylogenomic analysis of over 15,000 protein family "books" across the Tree of Life. Each book includes a multiple sequence alignment, one or more phylogenetic trees, predicted subfamilies, predicted 3D protein structures, active sites and other key residues, cellular localization, and Gene Ontology (GO) annotations and evidence codes. PhyloFacts includes hidden Markov models for classification of user-submitted (DNA or protein) sequences to protein families and subfamilies. Our current focus is on covering all the gene families represented in the human genome and all structural domains, but plan to expand the resource to include all proteins in all species. PhyloFacts enables biologists to avoid the systematic errors associated with function prediction by homology through the integration of a variety of experimental data and bioinformatics methods in an evolutionary framework.
    Subject Area : Phylogenomic Analysis


    Institute/s :
    Dept. of Bioengineering, University of California, Berkeley, CA, USA
    Address of Institute/s :
    Dept. of Bioengineering, University of California, Berkeley, CA, USA
    Country : United States

    Associated Institutes :

    • Dept. of Bioengineering, University of California, Berkeley, CA, USA

    Associated Country : USA


    Authors/Contributors : Krishnamurthy N.
    Contact Email : kimmen@berkeley.edu
    Year : 2006
    Language : English

    Keywords : Animals; Databases, Protein; Evolution, Molecular; Humans; Phylogeny; Protein Structure, Tertiary; Proteins / chemistry / classification / genetics; Structure-Activity Relationship