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  1. PathoPlant
    Full Name of the Resource : Signal transduction related to plant-pathogen interactions
    Resource Category : Databases -> Plant Databases -> Plant- General plant databases

    Brief Description : PathoPlant? has been developed as a relational database to display relevant components and reactions involved in signal transduction related to plant-pathogen interactions. Signal transduction pathways are modeled as consecutive sequences of known molecules and corresponding reactions. PathoPlant entries are linked to associated internal records as well as to entries in external databases such as SWISS-PROT, GenBank, TAIR, AthaMap, PubMed, and TRANSFAC?. PathoPlant has recently been complemented by microarray gene expression data from Arabidopsis thaliana subjected to pathogen infection and elicitor treatment. Implemented web tools enable identification of plant genes regulated by specific stimuli. Up to three stimuli can be combined with the option of induction factor restriction to determine similarly regulated genes. To identify common cis-regulatory elements in co-regulated genes, a resulting gene list can directly be exported to the AthaMap database (http://www.athamap.de) for analysis.

    Institute/s :
    Institut fur Genetik, Technische Universitat Braunschweig, Spielmannstrabe 7, D-38106 Braunschweig, Germany
    Address of Institute/s :
    Institut fur Genetik, Technische Universitat Braunschweig, Spielmannstrabe 7, D-38106 Braunschweig, Germany
    Country : Germany

    Associated Institutes :

    • Institut fur Genetik, Technische Universitat Braunschweig Spielmannstrabe 7, D-38106 Braunschweig, Germany
    • Software Systems Engineering Institute, Technische Universitat Braunschweig M?hlenpfordtstrabe 23, D-38106 Braunschweig, Germany

    Associated Country : Germany


    Authors/Contributors : Lorenz Bulow; Martin Schindler; Reinhard Hehl
    Contact Email : l.buelow@tu-braunschweig.de
    Year : 2006
    Language : English