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  1. PEPstr (View Publication)
    Resource Category : Webserver -> Protein -> Protein Structure

    Brief Description : The Pepstr server predicts the tertiary structure of small peptides with sequence length varying between 7 to 25 residues. The prediction strategy is based on the realization that ?-turn is an important and consistent feature of small peptides in addition to regular structures. Thus, the methods uses both the regular secondary structure information predicted from PSIPRED and ?-turns information predicted from BetaTurns. The side-chain abgles are placed using standard backbone-dependent rotamer library. The structure is further refined with energy minimization and molecular dynamic simulations using Amber version6.
    Subject Area : Tertiary Structure; Small Peptides


    Institute/s :
    Institute of Microbial Technology, Chandigarh, INDIA
    Address of Institute/s :
    Bioinformatics Centre, Institute of Microbial Technology, Sector 39A, Chandigarh, INDIA
    State : Chandigarh, UT
    Country : India


    Authors/Contributors : Harpreet Kaur; A. Garg; G P S Raghava
    Contact Email : raghava@imtech.res.in
    Year : 2007
    Language : English

    Keywords : Ligands; Monte Carlo Method; Peptides / chemistry / pharmacology; Protein Binding; Protein Structure, Tertiary