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  1. PEP
    Full Name of the Resource : Predictions for Entire Proteomes
    Resource Category : Databases -> Genomic Databases (Non-Human) -> General Genomics Databases

    Brief Description : PEP is a database of Predictions for Entire Proteomes. The database contains summaries of analyses of protein sequences from a range of organisms representing all three major kingdoms of life: eukaryotes, prokaryotes, and archaea. All proteins publicly available for each organism were aligned against SWISS-PROT, TrEMBL and PDB. Additionally the following annotations are provided: secondary structure, transmembrane helices, coiled coils, regions of low complexity, signal peptides, nuclear localization signals, PROSITE motifs and classes of cellular function. Proteins that contain long regions without regular secondary structure are also identified. We have produced a related database of structural domain-like fragments derived from PEP, and clusters based on homology between all fragments. The PEP database, fragments and clusters are distributed freely as a set of flat files, and have been integrated into SRS. The PEP group of databases can be accessed from: http://cubic.bioc.columbia.edu/pep.
    Subject Area : Proteomics


    Institute/s :
    Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA
    Department of Pharmacology, Columbia University, 630 West 168th Street, New York, NY 10032, USA

    Country : United States

    Associated Institutes :

    • CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA
    • North East Structural Genomics Consortium (NESG), Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA
    • Department of Pharmacology, Columbia University, 630 West 168th Street, New York, NY 10032, USA 4Columbia University Center for Computational Biology and Bioinformatics (C2B2), Russ Berrie Pavilion, 1150 St Nicholas Avenue, New York, NY 10032, USA

    Associated Country : USA


    Year : 2003