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  1. PEDANT (View Publication)
    Full Name of the Resource : Results of an automated analysis of genomic sequences
    Resource Category : Databases -> Genomic Databases (Non-Human) -> General Genomics Databases

    Brief Description : The PEDANT genome database (http://pedant.gsf.de) provides exhaustive automatic analysis of genomic sequences by a large variety of established bioinformatics tools through a comprehensive Web-based user interface. Nearly 3000 completely sequenced publicly available eukaryotic, eubacterial, archaeal and viral genomes with more than 4.5 million proteins have been processed so far. In particular, all completely sequenced genomes from the NCBI\'s Reference Sequence collection (RefSeq) (1) are covered. The PEDANT processing pipeline has been sped up by an order of magnitude through the utilization of precalculated similarity information stored in the similarity matrix of proteins (SIMAP) database (2), making it possible to process newly sequenced genomes immediately as they become available. For programmatic access Web Services are available at http://pedant.gsf.de/webservices.jsp.
    Subject Area : Genomic Sequence Analysis


    Institute/s :
    Institute for Bioinformatics, GSF - National Research Center for Environment and Heath, Ingolst?dter Landstra?e 1, 85764 Neueherberg, Germany
    Biomax Informatics AG, Lochhamer Stra?e 11, 82152 Martinsried, Germany
    Department of Genome-oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universit?t M?nchen, 85350 Freising, German

    Country : Germany

    Associated Institutes :

    • Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany
    • Department of Genome-oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München, Am Forum 1, 85350 Freising and 3Biomax Informatics AG, Lochhamer Strasse 9, 82152 Martinsried, Germany

    Associated Country : Germany


    Authors/Contributors : Frishman, D.
    Contact Email : d.frishman@wzw.tum.de
    Year : 2009
    Language : English

    Keywords : *Databases, Genetic; Genome; *Genomics; Internet; Proteins / *genetics