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  1. PDBsum
    Resource Category : Databases -> Structure Databases -> Protein structure

    Brief Description : PDBsum is a web-based atlas providing summary information and schematic diagrams for each macromolecular structural model deposited at the Protein Data Bank (PDB). It includes images of the structure, annotated plots of each protein chain\'s secondary structure, Pfam domains, detailed structural analyses generated by the PROMOTIF program, summary PROCHECK results, selected figures from the key reference, and schematic diagrams of protein-ligand. protein-protein and protein-DNA interactions. RasMol scripts highlight key aspects of the structure, such as the protein\'s domains, PROSITE patterns, and protein-ligand interactions, for interactive viewing in 3D. Numerous links take the user to related sites. PDBsum is updated whenever any new structures are released by the PDB. Additionally, users can upload their own strutural models, in PDB format, and get back a set of password-protected PDBsum analyses.

    Institute/s :
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Address of Institute/s :
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Country : United Kingdom

    Associated Institutes :

    • European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK

    Associated Country : United Kingdom


    Authors/Contributors : Roman A. Laskowski
    Contact Email : roman@ebi.ac.uk
    Year : 2008
    Language : English