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  1. PDB-Ligand (View Publication)
    Full Name of the Resource : 3D structures of small molecules bound to proteins and nucleic acids
    Resource Category : Databases -> Structure Databases -> Small Molecules

    Brief Description : PDB-Ligand is a three dimensional structure database of small molecular ligands that are bound to larger biomolecules deposited in the Protein Data Bank (PDB). One unique feature of PDB-Ligand is that one can browse, classify, superimpose, and visualize the interactions between ligands and proteins. Currently, there are about 5,000 types of small molecular ligands, experimentally determined as a complex with protein or DNA in PDB. PDB-Ligand serves as an interactive structural analysis and clustering tool for all the ligand-binding structures in PDB. PDB-Ligand also provides an easier way to obtain a number of different structure alignments of many related ligand-binding structures based on simple and flexible ligand clustering method. PDB-Ligand will be a good resource both for the better interpretation of ligand-binding structures and for the development of better scoring functions to be used in many drug discovery applications. PDB-Ligand is freely accessible through the URL at http://www.idrtech.com/PDB-Ligand/.
    Subject Area : Protein Data Bank, Ligand


    Institute/s :
    Research and Development, IDR Tech. B-3003 Tripolis, 210 KumGok-Dong, BunDang-Ku, SungNam-Shi, KyungKi-Do, Republic of Korea
    Address of Institute/s :
    Research and Development, IDR Tech. B-3003 Tripolis, 210 KumGok-Dong, BunDang-Ku, SungNam-Shi, KyungKi-Do, Republic of Korea 463-805
    Country : Korea

    Associated Institutes :

    • Research and Development, IDR Tech. B-3003 Tripolis, 210 KumGok-Dong, BunDang-Ku, SungNam-Shi, KyungKi-Do, Republic of Korea

    Associated Country : Korea


    Authors/Contributors : Jae-Min Shin
    Contact Email : jms@idrtech.com
    Year : 2004
    Language : English

    Keywords : Adenosine Triphosphate / chemistry / metabolism; Binding Sites; Databases, Protein; Ligands; Models, Molecular; Proteins / chemistry / metabolism