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  1. PANDIT (View Publication)
    Full Name of the Resource : Protein and associated nucleotide domains with inferred trees
    Resource Category : Databases -> Nucleotide Sequence Databases -> Coding and Coding DNA: Genes, Motifs and Regulatory Sites

    Brief Description : PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains the seed protein sequence alignments from the Pfam-A (curated families) database; nucleotide sequence alignments derived from sequences available for the above and using the protein alignments as 'templates'; protein sequence alignments restricted to the family members for which nucleotide sequences are available; and inferred phylogenetic trees for each alignment.
    Subject Area : Multiple Sequence Allignment; Phylogenetic Tree


    Institute/s :
    EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, UK
    Address of Institute/s :
    EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Country : United Kingdom

    Associated Institutes :

    • EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    • Department of Molecular Biology, Massachussetts General Hospital Boston, MA 02114, USA

    Associated Country : United Kingdom; USA


    Authors/Contributors : Simon Whelan
    Contact Email : simon@ebi.ac.uk
    Year : 2003
    Language : English

    Keywords : Algorithms; Amino Acid Sequence; Base Sequence; Database Management Systems; Databases, Nucleic Acid; Databases, Protein; Evolution, Molecular; Gene Expression Profiling / methods; Genetic Variation; Information Storage and Retrieval / methods; Models, Genetic; Models, Statistical; Molecular Sequence Data; Nucleotides / genetics; Phylogeny; Protein Structure, Tertiary; Sequence Alignment / methods; Sequence Analysis, DNA / methods; Sequence Analysis, Protein / methods


  2. PANDIT (View Publication)
    Full Name of the Resource : Multiple sequence alignments and phylogenetic tree
    Resource Category : Databases -> Protein Sequence Databases -> Protein Domain Databases (Protein Classification)

    Brief Description : PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains the seed protein sequence alignments from the Pfam-A (curated families) database; nucleotide sequence alignments derived from sequences available for the above and using the protein alignments as \'templates\'; protein sequence alignments restricted to the family members for which nucleotide sequences are available; and inferred phylogenetic trees for each alignment.
    Subject Area : Multiple Sequence Alignment; Phylogenetic Tree


    Institute/s :
    EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Address of Institute/s :
    EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Country : United Kingdom

    Associated Institutes :

    • EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    • Department of Molecular Biology, Massachussetts General Hospital Boston, MA 02114, USA

    Associated Country : United Kingdom; USA


    Contact Email : pandit@ebi.ac.uk, simon@ebi.ac.uk
    Year : 2006
    Language : English

    Keywords : Databases, Nucleic Acid; Databases, Protein; Evolution, Molecular; Internet; Phylogeny; Protein Structure, Tertiary; Sequence Alignment; Sequence Analysis, DNA; Sequence Homology, Amino Acid; Sequence Homology, Nucleic Acid; User-Computer Interface