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  1. Oryza Tag Line (View Publication)
    Resource Category : Databases -> Plant Databases -> Rice

    Brief Description : To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line database (http://genoplante-info.infobiogen.fr/OryzaTagLine/), a project supported by the French genomic initiative Génoplante. Today, this database describes 5,000 insertion lines. In the long term, the database will contain information about 46,000 insertion lines already produced. Generic features such as production records and seed stocks, as well as textual and pictorial information on GUS or GFP assays in specific organs or tissues, or morphophysiological alterations observed during field evaluation of the insertion lines are displayed. Forward genetic search is possible through a web interface where users can submit queries based on phenotypic alterations, reporter gene expression or keywords. We also propose to combine different types of queries in an advanced search page.
    Subject Area : Rice


    Institute/s :
    CIRAD, UMR 1096 PIA, Avenue Agropolis, F-34398 Montpellier Cedex 5, France
    Address of Institute/s :
    CIRAD, UMR 1096 PIA, Avenue Agropolis, F-34398 Montpellier Cedex 5, France
    Country : France

    Associated Institutes :

    • CIRAD, UMR 1096 PIA, Avenue Agropolis, F-34398 Montpellier Cedex 5, France
    • BIOGEMMA, 24, Avenue des Landais, F-63170 Aubi√®re, France
    • IRD, UMR 5096, Ird, BP5045, F-34032 Montpellier Cedex 01, France
    • INRA-ENSAM, UMR BGPI, Campus Baillarguet, F-34398 Montpellier Cedex 05, France

    Associated Country : France


    Contact Email : larmande@cirad.fr
    Year : 2008
    Language : English

    Keywords : DNA, Bacterial/genetics; Databases, Genetic; Gene Library; Genes, Reporter; Internet; Mutagenesis, Insertional; Mutation; Oryza sativa/genetics; Phenotype; Sequence Tagged Sites; User-Computer Interface