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  1. ORegAnno (View Publication)
    Resource Category : Databases -> Nucleotide Sequence Databases -> Transcriptional Regulator Sites and Transcription Factors

    Brief Description : ORegAnno is an open-source, open-access database and literature curation system for community-based annotation of experimentally identified DNA regulatory regions, transcription factor binding sites and regulatory variants. The current release comprises 30 145 records curated from 922 publications and describing regulatory sequences for over 3853 genes and 465 transcription factors from 19 species.

    Institute/s :
    Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4S6, Canada
    Address of Institute/s :
    Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4S6, Canada
    Country : Canada

    Associated Institutes :

    • Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4S6, Canada
    • Wellcome Trust Sanger Institute, CB10 1SA Hinxton, UK
    • VIB Department of Molecular and Developmental Genetics, Katholieke Universiteit Leuven, 3000 Leuven, Belgium
    • Department of Computational Biology, School of Medicine, 3501 Fifth Avenue, University of Pittsburgh, Pittsburgh, PA 15213, USA
    • DEPSN, Institut Alfred Fessard, CNRS, 91198 Gif-sur-Yvette, France
    • New York State Center of Excellence in Bioinformatics and the Life Sciences, Buffalo, NY 14203, USA
    • Center for Comparative Genomics and Bioinformatics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
    • VIB Department for Molecular Biomedical Research, Ghent University, 9052 Ghent, Belgium
    • Bioinformatics and Genomics Program, Centre de Regulacio Genomica. Dr Aiguader 88, 08003 Barcelona, Catalonia, Spain
    • Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver, BC V5Z 4H4, Canada
    • Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK
    • Department of genetics and pathology, Uppsala University, SE-75185 Uppsala, Sweden

    Associated Country : Canada; United Kingdom; Belgiuml; USA; France; Spain; Sweden


    Authors/Contributors : Obi L. Griffith; Stephen B. Montgomery; Bridget Bernier; Bryan Chu; Katayoon Kasaian; Stein Aerts; Shaun Mahony; Monica C. Sleumer; Mikhail Bilenky; Maximilian Haeussler; Malachi Griffith; Steven M. Gallo; Belinda Giardine; Bart Hooghe; Peter Van Loo; Enrique Blanco; Amy Ticoll; Stuart Lithwick; Elodie Portales-Casamar; Ian J. Donaldson; Gordon Robertson; Claes Wadelius1; Pieter De Bleser; Dominique Vlieghe; Marc S. Halfon; Wyeth Wasserman; Ross Hardison; Casey M. Bergman; Steven J.M. Jones
    Contact Email : obig@bcgsc.ca, sm8@sanger.ac.uk, sjones@bcgsc.ca
    Year : 2007