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  1. Non-Human Genome Segmental Duplication DB
    Full Name of the Resource : Segmental duplications in mouse, dog and chicken genomes
    Resource Category : Databases -> Human and Other Vertebrate Genomes -> Model Organisms, Comparative Genomics

    Brief Description : This web site contains information about segmental duplications in the genomes of mouse, dog chicken and rat. Information about segmental duplication in the human genome is presented at http://projects.tcag.ca/humandup. Analyses based on previous genome assemblies can be found in the Previous Analyses section. The criteria used to identify regions of segmental duplication are as follows: - Sequence identity of at least 90% -Sequence length of at least 5 kb -Not be entirely composed of repetitive elements The segmental duplication data and summary statistics are available for download in the Data section. Publications and their supplementary materials can be accessed in the Publications section. The segmental duplication data can be visualized in a genome browser in the GBrowse section. Selected annotation tracks (except the segmental duplication track) have also been obtained from UCSC and loaded into the genome browser. Detailed information (e.g. overlapping genes, overlapping clones, detailed alignment) can be obtained by clicking on a duplication cluster in GBrowse. Both keyword search and BLAT search are available from the Home page.

    Institute/s :
    Program in Genetics and Genomic Biology,
    Address of Institute/s :
    The Hospital for Sick Children, 555 University Ave, Toronto ON Canada M5G 1X8
    Country : Canada


    Authors/Contributors : Cheung J.; Zhang J.; Khaja R.; MacDonald J.R; Scherer S.W.
    Contact Email : jeffm@genet.sickkids.on.ca
    Year : 2003