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  1. MeRNA (View Publication)
    Full Name of the Resource : Metal ion binding sites in RNA
    Resource Category : Databases -> RNA -> RNA Sequence, Structure and Functions

    Brief Description : MeRNA (Metals in RNA) is a comprehensive compilation of all metal binding sites identified in RNA three-dimensional structures available from the Protein Data Bank (PDB) and Nucleic Acid Database. Currently, our database contains information relating to binding of 9764 metal ions corresponding to 23 distinct elements; in 256 RNA structures with coordinates released before July 1, 2005. MeRNA includes eight manually identified metal-ion binding motifs, which are described in the literature. MeRNA is searchable by PDB identifier, metal ion, method of structure determination, resolution and R-values for X-ray structure, and distance from metal to any RNA atom or to water. New structures with their respective binding motifs will be added to the database as they become available. The MeRNA database is accessible at http://merna.lbl.gov.
    Subject Area : Metal in RNA; Metal Binding Sites


    Institute/s :
    Department of Structural Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, USA.
    Address of Institute/s :
    Department of Structural Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
    Country : United States

    Associated Institutes :

    • Department of Structural Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory Berkeley, CA 94720, USA
    • Department of Plant and Microbial Biology 111 Koshland Hall #3102 University of California at Berkeley Berkeley, CA 94720-3102, USA

    Associated Country : USA


    Authors/Contributors : Stephen R. Holbrook
    Contact Email : SRHolbrook@lbl.gov
    Year : 2006
    Language : English

    Keywords : Binding Sites; Databases, Nucleic Acid; Internet; Ions / chemistry; Metals / chemistry / metabolism; Models, Molecular; Nucleic Acid Conformation; RNA / chemistry / metabolism; User-Computer Interface


  2. MeRNA (View Publication)
    Full Name of the Resource : Metal in RNA
    Resource Category : Databases -> Structure Databases -> Nucleic acid structure

    Brief Description : MeRNA (Metals in RNA) is a comprehensive compilation of all metal binding sites identified in RNA three-dimensional structures available from the Protein Data Bank (PDB) and Nucleic Acid Database. Currently, our database contains information relating to binding of 9764 metal ions corresponding to 23 distinct elements; in 256 RNA structures with coordinates released before July 1, 2005. MeRNA includes eight manually identified metal-ion binding motifs, which are described in the literature. MeRNA is searchable by PDB identifier, metal ion, method of structure determination, resolution and R-values for X-ray structure, and distance from metal to any RNA atom or to water. New structures with their respective binding motifs will be added to the database as they become available. The MeRNA database is accessible at http://merna.lbl.gov.
    Subject Area : Metal in RNA


    Institute/s :
    Department of Structural Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, MS 064-0121, Berkeley, CA 94720, USA
    Address of Institute/s :
    Department of Structural Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, MS 064-0121, Berkeley, CA 94720, USA
    Country : United States

    Associated Institutes :

    • Department of Structural Biology, Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, MS 064-0121, Berkeley, CA 94720, USA
    • Department of Plant and Microbial Biology, University of California at Berkeley, 111 Koshland Hall #3102, Berkeley, CA 94720-3102, USA

    Associated Country : USA


    Authors/Contributors : Holbrook S.R.
    Contact Email : SRHolbrook@lbl.gov
    Year : 2006
    Language : English

    Keywords : Binding Sites; Databases, Nucleic Acid; Internet; Ions / chemistry; Metals / chemistry / metabolism; *Models, Molecular; Nucleic Acid Conformation; RNA / chemistry / metabolism; User-Computer Interface