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  1. MOsDB (View Publication)
    Full Name of the Resource : MIPS Oryza sativa database
    Resource Category : Databases -> Plant Databases -> Rice

    Brief Description : MOsDB (http://mips.gsf.de/proj/plant/jsf/rice/index.jsp) is a resource for publicly available sequences of the rice (Oryza sativa L.) genome. Our goal at MOsDB is to provide all available data about rice genes and genomics, including (in the future) mutant information and expression profiles. At this moment, the MOsDB database includes current (updated on daily basis) published sequences and gene annotation information of two Oryza sativa subspecies: japonica and indica. Currenty (Jan. 2005), MOsDB houses over 60000 gene calls on the pseudomolecule assembly (12 chromosomes) as provided by TIGR (http://www.tigr.org/tdb/e2k1/osa1/index.shtml). When the International Rice Genome Sequencing Project (IRGSP) genome sequence and annotation becomes available, that will be included in parallel. To browse data, the user can navigate in a genome-oriented way. Starting from a chromosome list, one can retrieve detailed information on the chromsosome as well as links to sequence and genetic elements. The genetic element list links to reports on the protein genes or other features on display. Sequences can be viewed and downloaded as HTML, XML, FASTA and GAMEXML (Apollo annotation tool compatible) format. To visualize and browse genetic elements on a specified chromosome or contig, a graphical interface, DBBrowser, was developed. Easy access to the MOsDB data is also provided through web services (http://www.eu-plant-genome.net) for application-level access.
    Subject Area : Requences of Rice


    Institute/s :
    GSF National Research Center for Environment and Health, Neuherberg, Germany
    Address of Institute/s :
    Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Neuherberg, Germany
    Country : Germany

    Associated Institutes :

    • Institute for Molecular Biology and Biotechnology, Adam Mickiewicz University, 61-614 Poznan, Poland
    • Technische Universitaet Muenchen, Chair for Genome Oriented Bioinformatics, Center of Life and Food Science, Freising, Germany
    • Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Neuherberg, Germany

    Associated Country : Poland; Germany


    Authors/Contributors : Spannagl, M.
    Contact Email : manuel.spannagl@gsf.de
    Year : 2003
    Language : English

    Keywords : DNA Transposable Elements; Databases, Nucleic Acid; Genome, Plant; Genomics; Information Storage and Retrieval; Internet; Oryza sativa / genetics; Software; User-Computer Interface


  2. MOsDB (View Publication)
    Full Name of the Resource : MIPS Oryza sativa database
    Resource Category : Databases -> Plant Databases -> Rice

    Brief Description : MOsDB (http://mips.gsf.de/proj/plant/jsf/rice/index.jsp) is a resource for publicly available sequences of the rice (Oryza sativa L.) genome. Our goal at MOsDB is to provide all available data about rice genes and genomics, including (in the future) mutant information and expression profiles. At this moment, the MOsDB database includes current (updated on daily basis) published sequences and gene annotation information of two Oryza sativa subspecies: japonica and indica. Currenty (Jan. 2005), MOsDB houses over 60000 gene calls on the pseudomolecule assembly (12 chromosomes) as provided by TIGR (http://www.tigr.org/tdb/e2k1/osa1/index.shtml). When the International Rice Genome Sequencing Project (IRGSP) genome sequence and annotation becomes available, that will be included in parallel. To browse data, the user can navigate in a genome-oriented way. Starting from a chromosome list, one can retrieve detailed information on the chromsosome as well as links to sequence and genetic elements. The genetic element list links to reports on the protein genes or other features on display. Sequences can be viewed and downloaded as HTML, XML, FASTA and GAMEXML (Apollo annotation tool compatible) format. To visualize and browse genetic elements on a specified chromosome or contig, a graphical interface, DBBrowser, was developed. Easy access to the MOsDB data is also provided through web services (http://www.eu-plant-genome.net) for application-level access.

    Institute/s :
    Technische Universitaet Muenchen, Chair for Genome Oriented Bioinformatics, Center of Life and Food Science, Freising, Germany
    Address of Institute/s :
    Technische Universitaet Muenchen, Chair for Genome Oriented Bioinformatics, Center of Life and Food Science, Freising, Germany
    Country : Germany

    Associated Institutes :

    • MIPS/Institute for Bioinformatics, GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany

    Associated Country : Germany


    Authors/Contributors : Spannagl M.
    Contact Email : manuel.spannagl@gsf.de
    Year : 2003
    Language : English

    Keywords : DNA Transposable Elements; *Databases, Nucleic Acid; *Genome, Plant; *Genomics; Information Storage and Retrieval; Internet; Oryza sativa / *genetics; Software; User-Computer Interface