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  1. MODOMICS (View Publication)
    Full Name of the Resource : Database of RNA modification pathways
    Resource Category : Databases -> RNA -> RNA Sequence, Structure and Functions

    Brief Description : MODOMICS ('omics' approach to RNA modification) integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions. MODOMICS also provides literature information, and links to other databases, including the available protein sequence and structure data. MODOMICS can be queried by the type of nucleoside, type of RNA, position of a particular nucleoside, type of reaction (e.g. methylation, thiolation, deamination, etc.), and name or sequence of an enzyme of interest. The contents of MODOMICS can be accessed through the World Wide Web at http://genesilico.pl/modomics/.
    Subject Area : Chemical Structure of Modified Nucleosides


    Institute/s :
    Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Poland.
    Address of Institute/s :
    Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. Ks. Trojdena 4, PL-02-190 Warsaw, Poland. sdh@genesilico.pl
    Country : Poland

    Associated Institutes :

    • Bioinformatics Laboratory, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, PL-61-614 Poznan, Poland
    • Max Planck Institute for Developmental Biology, Department 1, Protein Evolution Spemannstr. 35, 72076 Tuebingen, Germany
    • Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Ks. Trojdena 4, PL-02-190 Warsaw, Poland
    • Institute of Biochemistry and Biophysics PAS, Pawinskiego 5a, 02-106 Warsaw and 5IGM, Univ Paris-Sud, UMR 8621, Orsay, F 91405, France

    Associated Country : Poland; France


    Authors/Contributors : Kristian Rother
    Contact Email : krother@genesilico.pl
    Year : 2009
    Language : English

    Keywords : Base Sequence; Databases, Nucleic Acid; Escherichia coli / enzymology / genetics; Internet; Nucleosides / metabolism; RNA Processing, Post-Transcriptional; RNA, Bacterial / chemistry / metabolism; RNA, Fungal / chemistry / metabolism; RNA, Transfer / chemistry / metabolism; Saccharomyces cerevisiae / enzymology / genetics; Sequence Alignment; User-Computer Interface