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  1. MBGD - Microbial Genome Database (View Publication)
    Full Name of the Resource : Microbial genome database for comparative analysis
    Resource Category : Databases -> Genomics Databases (Non-Vertebrate) -> General Genomics Databases

    Brief Description : MBGD is a workbench system for comparative analysis of completely sequenced microbial genomes. The heart of MBGD function is to create orthologous or homologous gene cluster table. For this purpose, similarities between all genes are precomputed and stored into the database, in addition to the annotations of genes such as function categories that were assigned by the original authors and motifs that were found in the translated sequence. Using these homology data, MBGD dynamically creates orthologous gene cluster table. Users can change a set of organisms or cutoff parameters to create their own orthologous grouping. Based on this cluster table, users can further analyze multiple genomes from various points of view with the functions such as global map comparison, local map comparison, multiple sequence alignment and phylogenetic tree construction
    Subject Area : Microbial Genomics


    Institute/s :
    Research Center for Computational Science, Okazaki National Research Institutes, Nishigonaka 38, Myodaiji, Okazaki 444-8585, Japan
    Country : Japan

    Associated Institutes :

    • National Institute for Basic Biology, National Institutes of Natural Sciences, Nishigonaka 38, Myodaiji, Okazaki, Aichi 444-8585, Japan
    • Intec Systems Institute, Inc., 1-3-3 Shinsuna, Koto-ku, Tokyo 136-0075, Japan

    Associated Country : Japan


    Authors/Contributors : Uchiyama I.
    Contact Email : uchiyama@nibb.ac.jp
    Year : 2010

    Keywords : Animals; Computational Biology / *methods / trends; *Databases, Genetic; *Databases, Nucleic Acid; Databases, Protein; Genome, Bacterial; Genome, Fungal; Genomics; Humans; Information Storage and Retrieval / methods; Internet; Phylogeny; Protein Structure, Tertiary; Sequence Alignment; Software