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  1. Lipid MAPS (View Publication)
    Full Name of the Resource : LIPID MAPS Proteome Database
    Resource Category : Databases -> Protein Sequence Databases -> Databases of Individual Protein Families

    Brief Description : The LIPID MAPS Proteome Database (LMPD) is an object-relational database of lipid-associated protein sequences and annotations. The initial release contains 2959 records, representing human and mouse proteins involved in lipid metabolism. UniProt IDs were obtained based on keyword search of KEGG and GO databases, and this LMPD protein list was then enhanced with annotations from UniProt, EntrezGene, ENZYME, GO, KEGG and other public resources. We also assigned associations with general lipid categories, based on GO and KEGG annotations. Users may search LMPD by database ID or keyword, and filter by species and/or lipid class associations; from the search results, one can then access a compilation of data relevant to each protein of interest, cross-linked to external databases. The LIPID MAPS Proteome Database (LMPD) is publicly available from the LIPID MAPS Consortium website (http://www.lipidmaps.org/).
    Subject Area : Proteome, Lipid


    Institute/s :
    San Diego Supercomputer Center, University of California, California, USA
    Address of Institute/s :
    San Diego Supercomputer Center, University of California, 9500 Gilman Drive, La Jolla, California 92093-0505, USA
    Country : United States

    Associated Institutes :

    • LIPID MAPS Bioinformatics Core, San Diego Supercomputer Center San Diego, La Jolla, CA 92093, USA
    • Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Pharmacology, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Pharmacology, Vanderbilt University Medical Center Nashville, TN 37232, USA
    • School of Biology, Georgia Institute of Technology Atlanta, GA 30332, USA
    • University of Colorado Health Sciences Center, Aurora CO 80045, USA
    • Department of Biochemistry, Duke University Medical Center Durham, NC 27710, USA
    • Department of Molecular Genetics, University of Texas Southwestern Medical Center Dallas, TX 75390, USA

    Associated Country : USA


    Authors/Contributors : Subramaniam S.
    Contact Email : shankar@sdsc.edu
    Year : 2007
    Language : English

    Keywords : Databases, Factual; Glycosphingolipids / chemistry; Humans; Internet; Isomerism; Lipid Metabolism; Lipids / chemistry / classification; Polysaccharides / chemistry; User-Computer Interface


  2. Lipid MAPS (View Publication)
    Full Name of the Resource : Lipid metabolites and pathways strategy
    Resource Category : Databases -> Metabolic and Signaling Pathways -> Metabolic Pathways


    Institute/s :
    LIPID MAPS Bioinformatics Core, San Diego Supercomputer Center San Diego,
    Address of Institute/s :
    LIPID MAPS Bioinformatics Core, San Diego Supercomputer Center San Diego, La Jolla, CA 92093, USA

    Country : United States

    Associated Institutes :

    • Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Pharmacology, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
    • Department of Pharmacology, Vanderbilt University Medical Center Nashville, TN 37232, USA
    • School of Biology, Georgia Institute of Technology Atlanta, GA 30332, USA
    • University of Colorado Health Sciences Center, Aurora CO 80045, USA
    • Department of Biochemistry, Duke University Medical Center Durham, NC 27710, USA
    • Department of Molecular Genetics, University of Texas Southwestern Medical CenterDallas, TX 75390, USA

    Associated Country : USA


    Authors/Contributors : Manish Sud; Eoin Fahy; Dawn Cotter; Alex Brown; Edward A. Dennis; Christopher K. Glass; Alfred H. Merrill; Robert C. Murphy; Christian R. H. Raetz; David W. Russell; Shankar Subramaniam
    Contact Email : shankar@sdsc.edu
    Year : 2006

    Keywords : Databases, Factual; Lipid Metabolism; Lipids chemistry classification; Terminology as Topic