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  1. KDBI (View Publication)
    Full Name of the Resource : Kinetic data of protein-protein, protein-nucleic acids, protein-ligand, nucleic acids-ligand binding or reaction events described in the literature
    Resource Category : Databases -> Protein Sequence Databases -> Protein properties

    Brief Description : KDBI is a collection of experimentally determined kinetic data of protein-protein, protein-nucleic acids, protein-ligand, nucleic acids-ligand binding or reaction events described in the literature. Since its first opening for public access in 2003, many efforts have been made continuously to improve this database both in database size and data representation methods. Currently, KDBI contains 20,803 entries (about 2.5 fold of 8,273 in year 2003) of 11,916 distinctive bio-molecular binding or interaction events, which involve 2,934 proteins, 870 nucleic acids and 6,713 small molecules. A new user-friendly search engine is developed for more accurate and efficient query, and a graphic interface is also designed for better representation of data. Moreover, more than 20 kinetic protein-protein interaction maps are constructed for better data visualization and further quantitative study of biological pathway. The KDBI can be accessed either at http://bidd.nus.edu.sg/group/kdbi/kdbi.asp (Hosted by Bioinformatics & Drug Design group, National University of Singapore, Singapore) or at http://bioinf.xmu.edu.cn/databases/kdbi/kdbi.php (Hosted by Bioinformatics Research Group of Xiamen University, P R China).
    Subject Area : Kinetic Data; Protein - Protein Interactions


    Institute/s :
    Bioinformatics Research Group, School of Life Sciences, Xiamen University, P R China
    Address of Institute/s :
    Bioinformatics Research Group, School of Life Sciences, Xiamen University, Xiamen 361005, FuJian Province, P R China
    Country : China

    Associated Institutes :

    • Bioinformatics and Drug Design Group, Centre for Computational Science and Engineering, National University of Singapore, Blk S16, Level 8, 3 Science Drive 2, Singapore
    • Bioinformatics Research Group, School of Life Sciences, Xiamen University, Xiamen 361005, FuJian Province, P. R. China

    Associated Country : Signgapore; China


    Authors/Contributors : Ji, Z.L.
    Contact Email : appo@bioinf.xmu.edu.cn
    Year : 2009
    Language : English

    Keywords : DNA/chemistry / metabolism; Databases, Genetic; Internet; Kinetics; Ligands; Macromolecular Substances; Proteins / chemistry / genetics / metabolism; RNA / chemistry / metabolism; Two-Hybrid System Techniques; User-Computer Interface


  2. KDBI (View Publication)
    Full Name of the Resource : Kinetic data of bio-molecular interactions
    Resource Category : Databases -> Metabolic and Signaling Pathways -> Protein-Protein Interactions

    Brief Description : KDBI is a collection of experimentally determined kinetic data of protein-protein, protein-nucleic acids, protein-ligand, nucleic acids-ligand binding or reaction events described in the literature. Since its first opening for public access in 2003, many efforts have been made continuously to improve this database both in database size and data representation methods. Currently, KDBI contains 20,803 entries (about 2.5 fold of 8,273 in year 2003) of 11,916 distinctive bio-molecular binding or interaction events, which involve 2,934 proteins, 870 nucleic acids and 6,713 small molecules. A new user-friendly search engine is developed for more accurate and efficient query, and a graphic interface is also designed for better representation of data. Moreover, more than 20 kinetic protein-protein interaction maps are constructed for better data visualization and further quantitative study of biological pathway. The KDBI can be accessed either at http://bidd.nus.edu.sg/group/kdbi/kdbi.asp (Hosted by Bioinformatics & Drug Design group, National University of Singapore, Singapore) or at http://bioinf.xmu.edu.cn/databases/kdbi/kdbi.php (Hosted by Bioinformatics Research Group of Xiamen University, P R China).

    Institute/s :
    Bioinformatics Research Group, School of Life Sciences, Xiamen University, FuJian Province, P R China
    Address of Institute/s :
    Bioinformatics Research Group, School of Life Sciences, Xiamen University, Xiamen 361005, FuJian Province, P R China
    Country : China

    Associated Institutes :

    • Bioinformatics and Drug Design Group, Centre for Computational Science and Engineering, National University of Singapore, Blk S16, Level 8, 3 Science Drive 2, Singapore
    • Bioinformatics Research Group, School of Life Sciences, Xiamen University, Xiamen 361005, FuJian Province, P. R. China

    Associated Country : Singapore; China


    Authors/Contributors : Pankaj Kumar; B. C. Han; Z. Shi; J. Jia; Y. P. Wang; Y. T. Zhang; L. Liang; Q. F. Liu; Z. L. Ji; Y. Z. Chen
    Contact Email : cyz@nus.edu.sg
    Year : 2008

    Keywords : Computer Simulation; *Databases, Genetic; Kinetics; Ligands; Multiprotein Complexes / chemistry / *metabolism; Nucleic Acids / chemistry / *metabolism; Protein Interaction Mapping; Software