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  1. JASPAR (View Publication)
    Resource Category : Webserver -> DNA -> Structure and Sequence Feature Detection

    Brief Description : JASPAR is an open-access database of matrix profiles describing the DNA-binding patterns of transcription factors (TFs) and other proteins interacting with DNA in a sequence-specific manner. The database now holds 457 non-redundant, curated profiles. The new entries include the first batch of profiles derived from ChIP-seq and ChIP-chip whole-genome binding experiments, and 177 yeast TF binding profiles. Classification of TF families has been improved by adopting a new DNA-binding domain nomenclature. A curated catalog of mammalian TFs is provided, extending the use of the JASPAR profiles to additional TFs belonging to the same structural family.

    Institute/s :
    Computational Biology Unit ? Bergen Center for Computational Science, and Sars Centre for Marine Molecular Biology, University of Bergen, Thormohlensgate 55, N-5008 Bergen, Norway
    Address of Institute/s :
    Computational Biology Unit ? Bergen Center for Computational Science, and Sars Centre for Marine Molecular Biology, University of Bergen, Thormohlensgate 55, N-5008 Bergen, Norway
    Country : Norway

    Associated Institutes :

    • Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Department of Medical Genetics, University of British Columbia, 950 West 28th Avenue, Vancouver BC, V5Z 4H4, Canada
    • Computational Biology Unit ? Bergen Center for Computational Science, and Sars Centre for Marine Molecular Biology, University of Bergen, Thormohlensgate 55, N-5008 Bergen, Norway
    • The Bioinformatics Centre, Department of Biology and Biomedical Research and Innovation Centre, Copenhagen University, Ole Maaloes Vej 5, DK-2200, Denmark

    Associated Country : Canada; Norway; Denmark


    Authors/Contributors : Elodie Portales-Casamar; Supat Thongjuea; Andrew T. Kwon; David Arenillas; Xiaobei Zhao; Eivind Valen; Dimas Yusuf; Boris Lenhard; Wyeth W. Wasserman; Albin Sandelin
    Contact Email : boris.lenhard@bccs.uib.no
    Year : 2004