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  1. IVDB (View Publication)
    Full Name of the Resource : Influenza Virus Database : Annotated sequences and geographic distribution of the influenza virus
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Viral Genome Databases

    Brief Description : Frequent outbreaks of highly pathogenic avian influenza and the increasing data available for comparative analysis require a central database specialized in influenza viruses. We have established the Influenza Virus Database (IVDB) to integrate information and create an analysis platform for genetic, genomic, and phylogenetic studies of the virus. IVDB hosts complete genome sequences of influenza A virus generated by Beijing Institute of Genomics and curates all other published influenza virus sequences after expert annotation. Our Q-Filter system classifies and ranks all nucleotide sequences into 7 categories according to sequence content and integrity. IVDB provides a series of tools and viewers for comparative analysis of the viral genomes, genes, genetic polymorphisms and phylogenetic relationships. A search system has been developed for users to retrieve a combination of different data types by setting search options. To facilitate analysis of global viral transmission and evolution, the IV Sequence Distribution Tool (IVDT) has been developed to display the worldwide geographic distribution of chosen viral genotypes and to couple genomic data with epidemiological data. The BLAST, multiple sequence alignment and phylogenetic analysis tools were integrated for online data analysis. Furthermore, IVDB offers instant access to pre-computed alignments and polymorphisms of influenza virus genes and proteins, and presents the results as SNP distribution plots and minor allele distributions.
    Subject Area : Avian Influenza; Influenza Virus


    Institute/s :
    Beijing Institute of Genomics, Chinese Academy of Sciences, China
    Address of Institute/s :
    Beijing Institute of Genomics, Chinese Academy of Sciences, B-6 Airport Industrial Zone, Beijing 101300, China
    Country : China

    Associated Institutes :

    • Beijing Institute of Genomics, Chinese Academy of Sciences, B-6 Airport Industrial Zone, Beijing 101300, China
    • Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China
    • James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou 310007, China

    Associated Country : China


    Contact Email : wangjing@genomics.org.cn
    Year : 2007
    Language : English

    Keywords : *Databases, Genetic; Genes, Viral; Genome, Viral; Genomics; Influenza A virus/genetics; Internet; Orthomyxoviridae/classification/*genetics; Phylogeny; Polymorphism, Genetic; Research; Software; Systems Integration; User-Computer Interface; Viral Proteins/chemistry/genetics


  2. IVDB
    Full Name of the Resource : Influenza Virus Database : Annotated sequences and geographic distribution of the influenza virus
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Viral Genome Databases

    Brief Description : Frequent outbreaks of highly pathogenic avian influenza and the increasing data available for comparative analysis require a central database specialized in influenza viruses. We have established the Influenza Virus Database (IVDB) to integrate information and create an analysis platform for genetic, genomic, and phylogenetic studies of the virus. IVDB hosts complete genome sequences of influenza A virus generated by Beijing Institute of Genomics and curates all other published influenza virus sequences after expert annotation. Our Q-Filter system classifies and ranks all nucleotide sequences into 7 categories according to sequence content and integrity. IVDB provides a series of tools and viewers for comparative analysis of the viral genomes, genes, genetic polymorphisms and phylogenetic relationships. A search system has been developed for users to retrieve a combination of different data types by setting search options. To facilitate analysis of global viral transmission and evolution, the IV Sequence Distribution Tool (IVDT) has been developed to display the worldwide geographic distribution of chosen viral genotypes and to couple genomic data with epidemiological data. The BLAST, multiple sequence alignment and phylogenetic analysis tools were integrated for online data analysis. Furthermore, IVDB offers instant access to pre-computed alignments and polymorphisms of influenza virus genes and proteins, and presents the results as SNP distribution plots and minor allele distributions.
    Subject Area : Influenza Virus


    Institute/s :
    1Beijing Institute of Genomics, Chinese Academy of Sciences, B-6 Airport Industrial Zone, Beijing 101300, China 2Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China 3James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou 310007, China
    Country : China

    Associated Institutes :

    • Beijing Institute of Genomics, Chinese Academy of Sciences, B-6 Airport Industrial Zone Beijing 101300, China
    • Institute of Computing Technology, Chinese Academy of Sciences Beijing 100080, China
    • James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou 310007 China
    • Joint Center for Microbial Genomics, Chinese Academy of Sciences Beijing 101300, China
    • Center for Molecular Virology, Institute of Microbiology, Chinese Academy of Sciences Beijing 100080, China

    Associated Country : China


    Authors/Contributors : Wang J
    Contact Email : wangjing@genomics.org.cn
    Year : 2007
    Language : English