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  1. HOINVGEN
    Full Name of the Resource : Homologous invertebrate genes
    Resource Category : Databases -> Genomic Databases (Non-Human) -> General Genomics Databases

    Brief Description : INVHOGEN (INVertebrate HOmologous GENes) is a database combining the available invertebrate protein genes from UniProt (consisting of Swiss-Prot, TrEMBL) into gene families. For each family INVHOGEN provides a multiple protein alignment, a maximum likelihood based phylogenetic tree, and taxonomic information about the sequences. It is possible to download the corresponding GenBank flatfiles, the alignment and the tree in Newick format. Sequences and related information have been structured in an ACNUC database under a client/server architecture. Thus, complex selections can be performed. An external graphical tool allows access to the data to evaluate homology relationships between genes and distinguish orthologous from paralogous sequences. INVHOGEN complements the well-known HOVERGEN database.
    Subject Area : Homologous Genes


    Institute/s :
    Department of Bioinformatics, Institute for Computer Sciences, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1, 40225 Duesseldorf, Germany
    Center for Integrative Bioinformatics Vienna, Dr Bohr-Gasse 9/6, A-1030 Vienna, Austria
    University of Vienna, Vienna, Austria
    Medical University of Vienna, Vienna, Austria
    University of Veterinary Medicine Vienna, Vienna, Austria

    Country : Germany; Austria

    Associated Institutes :

    • Department of Bioinformatics, Institute for Computer Sciences, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1 40225 Duesseldorf, Germany
    • Center for Integrative Bioinformatics Vienna Dr Bohr-Gasse 9/6, A-1030 Vienna, Austria
    • University of Vienna Vienna, Austria
    • Medical University of Vienna Vienna, Austria 4University of Veterinary Medicine Vienna Vienna, Austria

    Associated Country : Austria


    Authors/Contributors : Ingo Paulsen
    Contact Email : paulseni@uni-duesseldorf.de
    Year : 2006
    Language : English