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  1. HHomp (View Publication)
    Resource Category : Webserver -> DNA -> Gene Prediction

    Brief Description : HHomp is a web server for prediction and classification of outer membrane proteins (OMPs). Beginning with sequence similarity of a protein to known OMPs, HHomp builds a hidden markov model (HMM) and compares the input sequence to a database of OMPs by pairwise HMM comparison. The OMP database contains profile HMMs for over 20,000 putative OMP sequences.

    Institute/s :
    Department of Protein Evolution
    Max-Planck-Institute for Developmental Biology
    Spemannstrasse 35, 72076 Tübingen, Germany.

    Country : Germany


    Authors/Contributors : Remmert M, Linke D, Lupas AN, Söding J.
    Contact Email : soeding@lmb.uni-muenchen.de
    Year : 2009



  2. HHomp (View Publication)
    Resource Category : Webserver -> DNA -> Structure and Sequence Feature Detection

    Brief Description : HHomp is a web server for prediction and classification of outer membrane proteins (OMPs). Beginning with sequence similarity of a protein to known OMPs, HHomp builds a hidden markov model (HMM) and compares the input sequence to a database of OMPs by pairwise HMM comparison. The OMP database contains profile HMMs for over 20,000 putative OMP sequences.

    Institute/s :
    Department of Protein Evolution
    Max-Planck-Institute for Developmental Biology
    Spemannstrasse 35, 72076 Tübingen, Germany.

    Address of Institute/s :
    Department of Protein Evolution
    Max-Planck-Institute for Developmental Biology
    Spemannstrasse 35, 72076 Tübingen, Germany.

    Country : Germany


    Authors/Contributors : Remmert M, Linke D, Lupas AN, Söding J.
    Contact Email : soeding@lmb.uni-muenchen.de
    Year : 2009



  3. HHomp (View Publication)
    Resource Category : Webserver -> Model Organisms -> Microbes

    Brief Description : HHomp is a web server for prediction and classification of outer membrane proteins (OMPs). Beginning with sequence similarity of a protein to known OMPs, HHomp builds a hidden markov model (HMM) and compares the input sequence to a database of OMPs by pairwise HMM comparison. The OMP database contains profile HMMs for over 20,000 putative OMP sequences.

    Institute/s :
    Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany
    Address of Institute/s :
    Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany
    Country : Germany


    Authors/Contributors : Remmert M, Linke D, Lupas AN, Söding J.
    Contact Email : soeding@lmb.uni-muenchen.de
    Year : 2009