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  1. FusionDB (View Publication)
    Full Name of the Resource : Database of bacterial and archaeal gene fusion events
    Resource Category : Databases -> Protein Sequence Databases -> Protein Domain Databases (Protein Classification)

    Brief Description : The focus of FusionDB is to provide in-depth analysis information for biologists that try to understand particular gene functions. FusionDB provides multiple alignments of the fused genes as they occur in different genomes, together with phylogenetic tree reconstruction and structural information where available. Emphasis is put on the visualization and scoring of the individual events, and access to the raw sequences is always available. Abstraction from the individual gene in a single genome to the gene family as described by the Cluster of Orthologous Groups (Nucleic Acids Res. 2001 29:22-28) allows for example for database researches based on gene function. This database is cross-linked with our phylogenetic profiling Web-tool PhydBac (Nucl. Acids. Res. 2003 31: 3720-3722) and includes all finished genomes from GenBank as of May 2003.
    Subject Area : Bacterial Gene; Archaeal Gene


    Institute/s :
    Information Genomique & Structurale, UPR CNRS, France
    Address of Institute/s :
    Information Genomique & Structurale, UPR CNRS 2589, Marseille Cedex 20, France
    Country : France

    Associated Institutes :

    • Information Génomique and Structurale, CNRS?UPR 2589, 31 chemin Joseph Aiguier, 13402 Marseille Cedex 20, France

    Associated Country : France


    Authors/Contributors : Karsten Suhre
    Contact Email : Karsten.Suhre@igs.cnrs-mrs.fr
    Year : 2004
    Language : English

    Keywords : Artificial Gene Fusion; Computational Biology; Databases, Genetic; False Positive Reactions; Genes, Archaeal; Genes, Bacterial; Genome, Archaeal; Genome, Bacterial; Genomics; Information Storage and Retrieval; Internet; Open Reading Frames / genetics; Phylogeny; Prokaryotic Cells / metabolism; Recombination, Genetic / genetics; Sequence Alignment