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  1. ERGO-Light (View Publication)
    Full Name of the Resource : Integrated biochemical data on 10 bacterial genomes: Publicly-available portion of the ERGO database
    Resource Category : Databases -> Genomic Databases (Non-Human) -> General Genomics Databases

    Brief Description : The ERGO genome analysis and discovery system represents the development of a genome analysis strategy into a multi-dimensional environment, which supports both automatic and manual genome-wide curation. ERGO integrates genomic information with biochemical data, literature, and high-throughput analysis into a comprehensive user-friendly network of metabolic and non-metabolic pathways. The ERGO user can take into account sequence similarity, protein and gene context clustering, occurrence profiles, regulatory and expression data, as well as functional hierarchies in order to achieve a set of the best possible functional predictions. The Light edition, as its name denotes, is a streamlined version of the enterprise-scale ERGO Bioinformatics Suite, which is available only through subscription. ERGO-Light currently has only 7 genomes and is essentially a read-only version, lacking the annotation tools and the ability to configure a user environment. However, Light contains a full set of individual genome analysis tools and all the primary data types found in ERGO, including full contig data, protein sequence and annotations and chromosomal clustering information. Users can take advantage of the full metabolic and non-metabolic pathway database (containing over 5000 pathways) and a sample of the highly-curated bacterial metabolic reconstruction.
    Subject Area : Bacterial Genomics


    Institute/s :
    Integrated Genomics Inc., 2201 West Campbell Park Drive, Chicago, USA
    Address of Institute/s :
    Integrated Genomics Inc., 2201 West Campbell Park Drive, Chicago, IL 60612, USA
    Country : United States

    Associated Institutes :

    • Integrated Genomics Inc., 2201 West Campbell Park Drive, Chicago, IL 60612, USA

    Associated Country : USA


    Authors/Contributors : Ross Overbeek; Niels Larsen; Theresa Walunas; Mark D'Souza; Gordon Pusch; Eugene Selkov Jr; Konstantinos Liolios; Viktor Joukov; Denis Kaznadzey; Iain Anderson; Anamitra Bhattacharyya; Henry Burd; Warren Gardner; Paul Hanke; Vinayak Kapatral; Natalia Mikhailova; Olga Vasieva; Andrei Osterman; Veronika Vonstein; Michael Fonstein; Natalia Ivanova Nikos Kyrpides
    Contact Email : ross@integratedgenomics.com
    Year : 2003