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  1. EID (View Publication)
    Full Name of the Resource : Exon-intron database
    Resource Category : Databases -> Nucleotide Sequence Databases -> Gene Structure, Introns and Exons, Splice Sites

    Brief Description : The Exon-Intron Database (EID), publicly available since 2000, is a flat-file, Fasta-formated collection of sequences and annotations for all exons and introns obtained from GenBank. The primary goal of EID is to offer a comprehensive and convenient dataset of sequences for computational biologists who study exon-intron gene structures and pre-mRNA splicing. New innovations in EID have been implemented in 2005. The collection of exons and introns has been extended beyond coding regions and current versions of EID contain data on untranslated regions of gene sequences as well. Intron-less genes are included as a special part of EID. For species with entirely sequenced genomes, species-specific databases have been generated. Currently, these species-specific sets of all introns and all exons are available for human, mouse, rat, dog, chicken, zebrafish, fruit fly, worm (C. elegans), and mouse-ear cress (A. thaliana). This list will be extended on a monthly basis in accordance with GenBank updates. EID is freely available at http://www.meduohio.edu/bioinfo/eid/.
    Subject Area : Gene Sequence; Exon, Intron


    Institute/s :
    Department of Medicine and Program in Bioinformatics and Proteomics/Genomics, Medical University of Ohio, USA.
    Address of Institute/s :
    Department of Medicine and Program in Bioinformatics and Proteomics/Genomics, Medical University of Ohio, Toledo, OH 43614, USA.
    Country : United States

    Associated Institutes :

    • Department of Medicine and Program in Bioinformatics and Proteomics/Genomics, Medical University of Ohio, Toledo, OH 43614, USA
    • Department of Bioinformatics, Institute of Molecular Genetics, RAS, Moscow 123182, Russia.

    Associated Country : USA; Russia


    Authors/Contributors : Fedorov, A.
    Contact Email : afedorov@meduohio.edu
    Year : 2006
    Language : English

    Keywords : Base Sequence; Chromosome Mapping/*methods; DNA, Recombinant/genetics; *Database Management Systems; *Databases, Genetic; Documentation/methods; Exons/*genetics; Information Storage and Retrieval/*methods; Introns/*genetics; Molecular Sequence Data; Sequence Alignment/methods; Sequence Analysis, DNA/*methods; User-Computer Interface