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  1. DynaProt 2D (View Publication)
    Full Name of the Resource : Proteome database of Lactococcus lactis
    Resource Category : Databases -> Protein Sequence Databases -> Proteomics Resources

    Brief Description : DynaProt 2D provides dynamic online access to proteomes and 2D gels. The database was designed to administer complete in silico proteomes and links them with experimental proteomic data in the manner of two-dimensional electrophoresis gels (IPG-Dalt). The 2D gels serve as reference maps as well as tools for navigation of the database to switch between experimental and predicted data. Therefore, all identified spots in the gels are clickable and linked with summarized protein information. The protein information tables contain calculated characteristics, which are often used in proteomics, such as the molecular weight, isoelectric point, codon adaptation index, grand average of hydropathicity, predicted cellular localization, etc. Besides navigation via 2D gels, the clear graphical interface permits quick and intuitive searching throughout complete proteomes according to six different parameters. For example the search for proteins can be restricted to molecular mass and pH ranges, 2D gels and protein classes (e.g. ribosomal proteins or transporters). The first organism implemented in the database is Lactococcus lactis. Other model organisms as well as stress related experimental data of L. lactis will follow. Furthermore, the database was designed for continuous extension of the protein characteristics to keep up with the quick developments in proteomics. Therefore, additional proteomic data is welcome and will be referenced.
    Subject Area : Proteomics


    Institute/s :
    FG Proteomik, Technische Universität München, Freising-Weihenstephan, Germany
    Address of Institute/s :
    FG Proteomik, Technische Universität München, Freising-Weihenstephan, Germany
    Country : Germany


    Contact Email : oliver.drews@wzw.tum.de
    Year : 2005
    Language : English

    Keywords : Bacterial Proteins/chemistry; *Databases, Protein; *Electrophoresis, Gel, Two-Dimensional; Lactococcus lactis/chemistry; Proteome/*chemistry; *Proteomics; User-Computer Interface



  2. DynaProt 2D (View Publication)
    Full Name of the Resource : Proteome database of Lactococcus lactis
    Resource Category : Databases -> Proteomics -> Proteomics Resources

    Brief Description : DynaProt 2D provides dynamic online access to proteomes and 2D gels. The database was designed to administer complete in silico proteomes and links them with experimental proteomic data in the manner of two-dimensional electrophoresis gels (IPG-Dalt). The 2D gels serve as reference maps as well as tools for navigation of the database to switch between experimental and predicted data. Therefore, all identified spots in the gels are clickable and linked with summarized protein information. The protein information tables contain calculated characteristics, which are often used in proteomics, such as the molecular weight, isoelectric point, codon adaptation index, grand average of hydropathicity, predicted cellular localization, etc. Besides navigation via 2D gels, the clear graphical interface permits quick and intuitive searching throughout complete proteomes according to six different parameters. For example the search for proteins can be restricted to molecular mass and pH ranges, 2D gels and protein classes (e.g. ribosomal proteins or transporters). The first organism implemented in the database is Lactococcus lactis. Other model organisms as well as stress related experimental data of L. lactis will follow. Furthermore, the database was designed for continuous extension of the protein characteristics to keep up with the quick developments in proteomics. Therefore, additional proteomic data is welcome and will be referenced.

    Institute/s :
    FG Proteomik, Technische Universität München, Freising-Weihenstephan, Germany
    Country : Germany

    Associated Institutes :

    • Technische Universität München, FG Proteomik, Am Forum 2, D-85350 Freising-Weihenstephan, Germany

    Associated Country : Germany


    Authors/Contributors : Drews, O.
    Contact Email : oliver.drews@wzw.tum.de
    Year : 2005
    Language : English

    Keywords : Bacterial Proteins / chemistry; *Databases, Protein; *Electrophoresis, Gel, Two-Dimensional; Lactococcus lactis / chemistry; Proteome / *chemistry; *Proteomics; User-Computer Interface