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  1. DMAPS
    Resource Category : Databases -> Structure Databases -> Protein structure

    Brief Description : The Database of Multiple Alignments for Protein Structures (DMAPS) provides instant access to pre-computed multiple structure alignments for all protein structure families in the Protein Data Bank. Protein structure families have been obtained from four distinct classification methods including SCOP, CATH, ENZYME and CE, and multiple structure alignments have been built for all families containing at least three members, using CE-MC software. Currently, multiple structure alignments are available for 3050 SCOP-, 3087 CATH-, 664 ENZYME- and 1707 CE-based families. A web-based query system has been developed to retrieve multiple alignments for these families using the PDB chain ID of any member of a family. Multiple alignments can be viewed or downloaded in six different formats including JOY/html, TEXT, FASTA, PDB (superimposed coordinates), JOY/post-script and JOY/rtf. DMAPS is accessible online at the URL http://bioinformatics.albany.edu/~dmaps.

    Institute/s :
    University at Albany, USA
    Address of Institute/s :
    University at Albany, USA
    Country : USA

    Associated Institutes :

    • Gen NY sis Center for Excellence in Cancer Genomics and Department of Epidemiology and Biostatistics, University at Albany, State University of New York One Discovery drive, Rensselaer, NY 12144-3456, USA
    • San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0505, USA

    Associated Country : USA


    Authors/Contributors : Chittibabu Guda; Lipika R. Pal; Ilya N. Shindyalov
    Contact Email : cguda@albany.edu
    Year : 2005
    Language : English