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  1. DBTSS
    Resource Category : Databases -> Nucleotide Sequence Databases -> Transcriptional Regulator Sites and Transcription Factors

    Brief Description : DBTSS is a collection of transcriptional start sites and adjacent promoters, which are experimentally determined by intensive analyses of full-length cDNAs. In order to extract biological insight from the compiled sequence information, search engines for putative transcription factor binding sites are implemented. Also, for molecular evolutionary studies of the transcriptional regulations, detailed sequence alignments of the promoters between human, mouse and other model organisms are provided. DBTSS is available on the web in Japan at http://dbtss.hgc.jp, in Germany at http://dbtss.bioinf.med.uni-goettingen.de/ and in Poland at http://tarawa.icm.edu.pl/dbtss/. The positional information of the TSSs, sequences of the promoters and related information can also be downloaded in flatfile form from the download site. The current release of DBTSS (5.1) contains TSS information of 15262 and 14162 genes determined by 1.4 and 0.4 million cDNAs in humans and mice, respectively.

    Institute/s :
    Human Genome Center, Insisitute of Medical Science, the University of Tokyo, 4-6-1 Shirokanedai, Minatoku, Tokyo 108-8639, Japan
    Address of Institute/s :
    Human Genome Center, Insisitute of Medical Science, the University of Tokyo, 4-6-1 Shirokanedai, Minatoku, Tokyo 108-8639, Japan
    Country : Japan

    Associated Institutes :

    • Frontier Research Initiative, Institute of Medical Science, Japan
    • Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
    • Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa-shi, Chiba, 277-8568, Japan

    Associated Country : Japan


    Authors/Contributors : Riu Yamashita; Sumio Sugano; Yutaka Suzuki; Kenta Nakai
    Contact Email : knakai@ims.u-tokyo.ac.jp
    Year : 2011