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  1. DBAli (View Publication)
    Resource Category : Databases -> Structure Databases -> Protein Structure

    Brief Description : DBAli is a database that includes a comprehensive all-against-all comparison of protein structures in the PDB database. Tools associated with the database allow users to mine this protein structure space by establishing relationships between protein structures and their functions.

    Institute/s :
    Structural Genomics Unit, Bioinformatics Department. Centro de Investigacian Pra?ncipe Felipe. Valencia, Spain
    Address of Institute/s :
    Structural Genomics Unit, Bioinformatics Department. Centro de Investigacian Pra?ncipe Felipe. Valencia, Spain
    Country : Spain

    Associated Institutes :

    • 1Structural Genomics Unit, University of California at San Francisco, San Francisco, CA 94158-2330, USA
    • Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, and California Institute for Quantitative Biomedical Research, University of California at San Francisco, San Francisco, CA 94158-2330, USA
    • Functional Genomics Unit, Bioinformatics Department, Centro de Investigaci?n Pr?ncipe Felipe (CIPF), Valencia, Spain

    Associated Country : USA; Spain


    Authors/Contributors : Marc A. Marti-Renom; Ursula Pieper; M. S. Madhusudhan; Andrea Rossi; Narayanan Eswar; Fred P. Davis; Fatima Al-Shahrour; Joaquin Dopazo; Andrej Sali
    Contact Email : mmarti@cipf.es
    Year : 2007


  2. DBAli
    Resource Category : Databases -> Structure Databases -> Protein structure

    Brief Description : DBAli, a database of pairwise and multiple structure alignments, stores pairwise comparisons of all structures in the Protein Data Bank calculated using the program MAMMOTH. It also contains multiple structure alignments generated by the SALIGN command of MODELLER. DBAli is updated weekly. As of August 2007, DBAli contains ~1.7 billion pairwise comparisons and over 12,500 family-based multiple structure alignments for ~35,000 non-redundant protein chains in the PDB.

    Institute/s :
    Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain
    Address of Institute/s :
    Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain
    Country : Spain

    Associated Institutes :

    • Structural Genomics Unit. Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, California Institute for Quantitative Biomedical Research
    • University of California at San Francisco, San Francisco, CA 94158-2330 USA
    • Functional Genomics Unit, Bioinformatics Department, Centro de Investigación Principe Felipe (CIPF), Valencia, Spain

    Associated Country : USA; Spain


    Authors/Contributors : Marc A. Marti-Renom; Ursula Pieper; M. S. Madhusudhan; Andrea Rossi; Narayanan Eswar; Fred P. Davis; Fatima Al-Shahrour; Joaquin Dopazo; Andrej Sali
    Contact Email : mmarti@cipf.es
    Year : 2007
    Language : English