Advance Search              Latest Recources





















Showing search results (1–1 of 1):

  1. Cereal Small RNA Database (View Publication)
    Full Name of the Resource : Cereal Small RNA Database
    Resource Category : Databases -> RNA -> RNA Sequence, Structure and Functions

    Brief Description : Small RNAs (smRNAs), which include microRNAs (miRNAs), small-interfering RNAS (siRNAs) and trans-acting siRNAs (ta-siRNAs) are ~19-24 nt RNAs that are important negative regulators of nucleotide sequences involved in development, homeostasis and in the maintenance of heterochromatic states. The Cereals Small RNA Database (CSRDB) is an integrated resource for small RNAs expressed in rice and maize that includes a genome browser and a smRNA-target relational database as well as relevant bioinformatic tools. The resource currently contains a preliminary dataset of 35,454 and 68,871 mapped smRNA sequence reads for rice and maize respectively. Future updates will include smRNA data derived from different tissues and conditions. The database is accessible online at http://sundarlab.ucdavis.edu/smrnas/.
    Subject Area : Cereal; RNA


    Institute/s :
    Section of Plant Biology and Department of Plant Sciences,
    Address of Institute/s :
    University of California Davis, Davis, CA 95616, USA
    Country : United States

    Associated Institutes :

    • Department of Biological Sciences, University of South Carolina Columbia, SC 29208, USA
    • Biological and Medical Informatics, University of California San Francisco, CA 94143, USA
    • Department of Plant Sciences, College of Agricultural Sciences, University of California Davis, CA 95616, USA

    Associated Country : USA


    Authors/Contributors : Cameron Johnson
    Contact Email : camjohnson@ucdavis.edu
    Year : 2007
    Language : English

    Keywords : Databases, Nucleic Acid; Gene Expression Regulation, Plant; Genome, Plant; Genomics; Internet; MicroRNAs / chemistry; Oryza sativa / genetics; RNA, Messenger / metabolism; RNA, Small Interfering / chemistry; Systems Integration; User-Computer Interface; Zea mays / genetics