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  1. CYGD
    Full Name of the Resource : MIPS Comprehensive yeast genome database
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Fungal Genome Gatabases

    Brief Description : One of the milestones of genome research was the determination of the sequence of the whole genome of the well-studied model eukaryote, the budding yeast Saccharomyces cerevisiae. Goal of this project was the sequencing of the entire nuclear genome of the commonly used laboratory strain S288C. The project started in 1989 and finished in spring 1996. More than 100 laboratories from Europe, USA, Canada and Japan took part of the joined effort. The MIPS Comprehensive Yeast Genome Database aims to present information on the genomic structure of Saccharomyces cerevisiae. CYGD presents itself as a knowledge base organized according to the genomic structure. The data are shown for different abstraction levels of the genome. Update reports, graphical displays, and summary tables are provided for the entire genome, or alternatively, for one of the nuclear chromosomes or the mitochondrial genome (tabular, graphically). In particular, MIPS offers detailed genetic, biochemical, and cell biological information for all individual elements of the genomic structure, such as open reading frames (access ORFs via search tools using gene name aliases or text strings, or ORF listings regarding chromosome structure, or common attributes, such as function). Just as well, genetic, biochemical, and cell biological data are supplied for RNA genes and various DNA elements (e.g. centromers, or upstream activation sequences). Another means of data retrieval is available via browsing tables and graphics, reviews , or catalogues regarding a particular yeast topic. A major part of this information gets extracted by manual annotation from the yeast literature, and results of the systematic functional analysis projects as well as cross-references to other in-house or external databases (NCBI, PIR, PEDANT, EMBL] provide complementary material. In addition information and links to related ascomycetous species are added as far as genomic information is available.
    Subject Area : Yeast Genome


    Institute/s :
    Institute for Bioinformatics, GSF National Research Center for Environment and Health, Germany.
    Address of Institute/s :
    Institute for Bioinformatics, GSF National Research Center for Environment and Health, Ingolstadter Landstrasse 1, D-85764 Neuherberg, Germany.
    Country : Germany

    Associated Institutes :

    • Service de Conformation des Macromolécules Biologiques et Bioinformatique, Université Libre de Bruxelles, CP 263, Blvd du Triomphe, B-1050 Bruxelles, Belgium ◦
    • Departamento de Bioquímica y Biología Molecular, Universitat de València, C/Dr Moliner 50, E-46100 Burjassot, Spain ◦
    • Department of Bioinformatics, UKG, University of Göttingen, Goldschmidtstrasse 1, D-37077 Göttingen, Germany ◦
    • Biomax Informatics AG, Lochhamerstrasse 11, 82152 Martinsried, Germany ◦
    • CNRS-LCB, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France ◦
    • Unité de Génétique moléculaire des levures (URA 2171 CNRS and UFR 927 Université Pierre and Marie Curie), Institut Pasteur, Paris, France ◦
    • Laboratoire de Physiologie cellulaire CP300, Universite Libre de Bruxelles, IBMM, rue des Pr. Jeener et Brachet, 12, 6041 Gosselies, Belgium ◦
    • Laboratoire de Dynamique, Evolution et Expression des Génomes de Microorganismes, Université Louis Pasteur/CNRS, FRE 2326, 28 rue Goethe, 67000 Strasbourg, France ◦
    • Laboratoire de Génétique Moléculaire et Cellulaire (URA 1925 CNRS and UMR 216 INRA), INA-PG PO Box 01, F-78850 Thiverval Grignon, France ◦
    • Technische Universität München, Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, D-85350 Freising-Weihenstephan, Germany

    Associated Country : Belgium; France; Germany


    Authors/Contributors : H. W. Mewes
    Contact Email : w.mewes@gsf.de
    Year : 2005
    Language : English

    Keywords : Binding Sites; *Databases, Genetic; *Genome, Fungal; Genomics; Membrane Proteins/analysis; Membrane Transport Proteins/analysis/metabolism; Saccharomyces cerevisiae/*genetics/metabolism; Saccharomyces cerevisiae Proteins/chemistry/*genetics/metabolism; Sequence Analysis, Protein; Transcription Factors/metabolism; User-Computer Interface


  2. CYGD
    Full Name of the Resource : MIPS Comprehensive yeast genome database
    Resource Category : Databases -> Genomic Databases (Non-Human) -> Yeasts

    Brief Description : One of the milestones of genome research was the determination of the sequence of the whole genome of the well-studied model eukaryote, the budding yeast Saccharomyces cerevisiae. Goal of this project was the sequencing of the entire nuclear genome of the commonly used laboratory strain S288C. The project started in 1989 and finished in spring 1996. More than 100 laboratories from Europe, USA, Canada and Japan took part of the joined effort. The MIPS Comprehensive Yeast Genome Database aims to present information on the genomic structure of Saccharomyces cerevisiae. CYGD presents itself as a knowledge base organized according to the genomic structure. The data are shown for different abstraction levels of the genome. Update reports, graphical displays, and summary tables are provided for the entire genome, or alternatively, for one of the nuclear chromosomes or the mitochondrial genome (tabular, graphically). In particular, MIPS offers detailed genetic, biochemical, and cell biological information for all individual elements of the genomic structure, such as open reading frames (access ORFs via search tools using gene name aliases or text strings, or ORF listings regarding chromosome structure, or common attributes, such as function). Just as well, genetic, biochemical, and cell biological data are supplied for RNA genes and various DNA elements (e.g. centromers, or upstream activation sequences). Another means of data retrieval is available via browsing tables and graphics, reviews , or catalogues regarding a particular yeast topic. A major part of this information gets extracted by manual annotation from the yeast literature, and results of the systematic functional analysis projects as well as cross-references to other in-house or external databases (NCBI, PIR, PEDANT, EMBL] provide complementary material. In addition information and links to related ascomycetous species are added as far as genomic information is available.
    Subject Area : Genomics


    Institute/s :
    Institute for Bioinformatics, GSF National Research Center for Environment and Health, Ingolst?dter Landstrasse ,Neuherberg, Germany
    Address of Institute/s :
    Institute for Bioinformatics, GSF National Research Center for Environment and Health, Ingolst?dter Landstrasse 1, D-85764 Neuherberg, Germany

    Associated Institutes :

    • Institute for Bioinformatics, GSF National Research Center for Environment and Health, Ingolst?dter Landstrasse 1, D-85764 Neuherberg, Germany
    • Service de Conformation des Macromol?cules Biologiques et Bioinformatique, Universit? Libre de Bruxelles, CP 263, Blvd du Triomphe, B-1050 Bruxelles, Belgium
    • Departamento de Bioqu?mica y Biolog?a Molecular, Universitat de Val?ncia, C/Dr Moliner 50, E-46100 Burjassot, Spain
    • Department of Bioinformatics, UKG, University of G?ttingen, Goldschmidtstrasse 1, D-37077 G?ttingen, Germany
    • Biomax Informatics AG, Lochhamerstrasse 11, 82152 Martinsried, Germany
    • CNRS-LCB, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France
    • Unit? de G?n?tique mol?culaire des levures (URA 2171 CNRS and UFR 927 Universit? Pierre and Marie Curie), Institut Pasteur, Paris, France
    • Laboratoire de Physiologie cellulaire CP300, Universite Libre de Bruxelles, IBMM, rue des Pr. Jeener et Brachet, 12, 6041 Gosselies, Belgium
    • Laboratoire de Dynamique, Evolution et Expression des G?nomes de Microorganismes, Universit? Louis Pasteur/CNRS, FRE 2326, 28 rue Goethe, 67000 Strasbourg, France
    • Laboratoire de G?n?tique Mol?culaire et Cellulaire (URA 1925 CNRS and UMR 216 INRA), INA-PG PO Box 01, F-78850 Thiverval Grignon, France
    • Technische Universit?t M?nchen, Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, D-85350 Freising-Weihenstephan, Germany

    Associated Country : Germany; Belgium; France; Spain


    Authors/Contributors : U. G?ldener; M. M?nsterk?tter; G. Kastenm?ller; N. Strack; J. van Helden; C. Lemer; J. Richelles; S. J. Wodak; J. Garc?a-Mart?nez; J. E. P?rez-Ort?n; H. Michael; A. Kaps; E. Talla; B. Dujon; B. Andr?; J. L. Souciet; J. De Montigny; E. Bon; C. Gaillardin; H. W. Mewes
    Contact Email : mips-fungi-adm@gsf.de
    Year : 2004