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  1. COMe (View Publication)
    Full Name of the Resource : Co-Ordination of Metals etc.
    Resource Category : Databases -> Protein Sequence Databases -> Protein Sequence Motifs and Active Sites

    Brief Description : COMe (Co-Ordination of Metals etc.) represents the classification of bioinorganic proteins. COMe consists of three types of entries: "bioinorganic motif", "molecule", and "complex protein"; each entry is assigned a unique identifier. A bioinorganic motif (BIM) consists of at least one centre (metal atom, inorganic cluster, organic molecule) and two or more endogenous and/or exogenous ligands. BIMs are represented as one-dimensional strings and two-dimensional diagrams. A molecule (MOL) represents any molecular entity ("small molecule") which, in complex with polypeptide(s), forms a functional protein. A complex protein (PRX) entry may refer to the functional protein as well as separate protein domains and subunits. The main classes of complex proteins in COMe are (i) metalloproteins, (ii) organic prosthetic group proteins and (iii) modified amino acid proteins. The data are currently stored in both XML format and a relational database and are available at http://www.ebi.ac.uk/come/.
    Subject Area : Bioinorganic Proteins


    Institute/s :
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambs CB10 1SD, United Kingdom.
    Address of Institute/s :
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambs CB10 1SD, United Kingdom.
    Country : United Kingdom


    Authors/Contributors : Degtyarenko, K; Contrino, S
    Contact Email : kirill@ebi.ac.uk
    Year : 2004
    Language : English

    Keywords : Binding Sites; Computational Biology; Databases, Protein /standards; Internet; Ligands; Metals / chemistry; Proteins / chemistry / classification; Terminology as Topic; User-Computer Interface



  2. COMe (View Publication)
    Full Name of the Resource : Co-Ordination of Metals etc.
    Resource Category : Databases -> Protein Sequence Databases -> Protein sequence motifs and active sites

    Brief Description : COMe (Co-Ordination of Metals etc.) represents the classification of bioinorganic proteins. COMe consists of three types of entries: "bioinorganic motif", "molecule", and "complex protein"; each entry is assigned a unique identifier. A bioinorganic motif (BIM) consists of at least one centre (metal atom, inorganic cluster, organic molecule) and two or more endogenous and/or exogenous ligands. BIMs are represented as one-dimensional strings and two-dimensional diagrams. A molecule (MOL) represents any molecular entity ("small molecule") which, in complex with polypeptide(s), forms a functional protein. A complex protein (PRX) entry may refer to the functional protein as well as separate protein domains and subunits. The main classes of complex proteins in COMe are (i) metalloproteins, (ii) organic prosthetic group proteins and (iii) modified amino acid proteins. The data are currently stored in both XML format and a relational database and are available at http://www.ebi.ac.uk/come/.
    Subject Area : Bioorganic Proteins


    Institute/s :
    EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Address of Institute/s :
    EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Country : United Kingdom

    Associated Institutes :

    • EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK

    Associated Country : United Kingdom


    Authors/Contributors : Degtyarenko, K.
    Contact Email : kirill@ebi.ac.uk
    Year : 2004
    Language : English

    Keywords : Binding Sites; Computational Biology; Databases, Protein / standards; Internet; Ligands; Metals / chemistry; Proteins / chemistry / classification; Terminology as Topic; User-Computer Interface