Advance Search              Latest Recources





















Showing search results (1–1 of 1):

  1. Brassica BASC (View Publication)
    Full Name of the Resource : Multinational Brassica Genome Sequencing Project
    Resource Category : Databases -> Plant databases -> Other plants

    Brief Description : The BASC system provides tools for the integrated mining and browsing of genetic, genomic and phenotypic data. This public resource hosts information on Brassica species supporting the Multinational Brassica Genome Sequencing Project, and is based upon five distinct modules, ESTDB, Microarray, MarkerQTL, CMap and EnsEMBL. ESTDB hosts expressed gene sequences and related annotation derived from comparison with GenBank, UniRef, and the genome sequence of Arabidopsis. The Microarray module hosts gene expression information related to genes annotated within ESTDB. MarkerQTL is the most complex module and integrates information on genetic markers, maps, individuals, genotypes and traits. Two further modules include an Arabidopsis EnsEMBL genome viewer and the CMap comparative genetic map viewer for the visualisation and integration of genetic and genomic data. The database is accessible at http://bioinformatics.pbcbasc.latrobe.edu.au
    Subject Area : Brassica


    Institute/s :
    Victorian Bioinformatics Consortium, Primary Industries Research Victoria, Department of Primary Industries, Victorian AgriBiosciences Centre, Victoria, Australia
    Address of Institute/s :
    Victorian Bioinformatics Consortium, Primary Industries Research Victoria, Department of Primary Industries, Victorian AgriBiosciences Centre, 1 Park Drive, Bundoora, Victoria 3083, Australia

    Country : Australia

    Associated Institutes :

    • Plant Biotechnology Centre, Primary Industries Research Victoria, Department of Primary Industries, Victorian AgriBiosciences Centre, 1 Park Drive, Bundoora, Victoria 3083, Australia
    • Victorian Bioinformatics Consortium, Primary Industries Research Victoria, Department of Primary Industries, Victorian AgriBiosciences Centre, 1 Park Drive, Bundoora, Victoria 3083, Australia
    • Australian Centre for Plant Functional Genomics, Primary Industries Research Victoria, Department of Primary Industries, Victorian AgriBiosciences Centre, 1 Park Drive, Bundoora, Victoria 3083, Australia
    • University of California, Berkeley, CA 94720-3102, USA
    • McGill Centre for Bioinformatics, McGill University, Montreal, Quebec, Canada
    • Telethon Institute of Genetics and Medicine, Via Pietro Castellino 111, 80131 Napoli, ITALY
    • Healthcare & Life Sciences Solutions Manager, IBM Australia, 60 City Road, Southbank, Victoria, Australia

    Associated Country : Australia; USA; Italy; Canada


    Authors/Contributors : Timothy A. Erwin; Erica G. Jewell; Christopher G. Love; Geraldine A. C. Lim; Xi Li; Ross Chapman; Jacqueline Batley; Jason E. Stajich; Emmanuel Mongin; Elia Stupka; Bruce Ross; German Spangenberg; David Edwards
    Contact Email : Dave.Edwards@dpi.vic.gov.au
    Year : 2006
    Language : English

    Keywords : Arabidopsis genetics; Brassica genetics; Chromosome Mapping; Computational Biology; Databases, Genetic; Expressed Sequence Tags chemistry; Gene Expression Profiling; Genetic Markers; Genome, Plant; Genomics; Internet; Phenotype; Quantitative Trait Loci; Software; Systems Integration; User-Computer Interface