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  1. BodyMap (View Publication)
    Full Name of the Resource : Human and mouse gene expression data
    Resource Category : Databases -> Human and Other Vertebrate Genomes -> Model Organisms, Comparative Genomics

    Brief Description : BodyMap is a human and mouse gene expression database that has been maintained since 1993. It is based on site-directed 3ยน-ESTs collected from non-biased cDNA libraries constructed at Osaka University and contains more than 270, 000 sequences from 60 human and 38 mouse tissues. The site-directed nature of the sequence tags allows unequivocal grouping of tags representing the same transcript and provides abundance information for each transcript in different parts of the body. Our collection of ESTs was compared periodically with other public databases for cross referencing. The histological resolution of source tissues and unique cloning strategy that minimized cloning bias enabled BodyMap to support three unique mRNA based experiments in silico. First, the recurrence information for clones in each library provides a rough estimate of the mRNA composition of each source tissue. Second, a user can search the entire data set with nuleotide sequences or keywords to assess expression patterns of particular genes. Third, and most important, BodyMap allows a user to select genes that have a desired expression pattern in humans and mice. BodyMap is accessible through the World Wide Web at http://bodymap.ims.u-tokyo.ac.jp

    Institute/s :
    Center for Information Biology/DDBJ, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka, 411-8540, Japan
    Department of Computational Biology, University of Tokyo, Kashiwa Campus, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8585, Japan

    Country : Japan

    Associated Institutes :

    • Department of Complexity Science and Engineering, Graduate School of Frontier Science, University of Tokyo, 7-3-1 Hongo, Bunkyo Word, Tokyo 113-0033, Japan
    • Institute for Molecular and Cellular Biology, Osaka University, 1-3 Yamada-oka, Suita, Osaka 565-0871, Japan

    Associated Country : Japan


    Authors/Contributors : Kousaku Okubo
    Contact Email : kousaku@genes.nig.ac.jp
    Year : 2001
    Language : English

    Keywords : Animal Structures / metabolism; Animals; *Databases, Nucleic Acid; Evolution, Molecular; *Expressed Sequence Tags / chemistry / metabolism; *Gene Expression; Humans; Internet; User-Computer Interface