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  1. BodyMap-Xs (View Publication)
    Full Name of the Resource : Cross-species comparison of vertebrate gene expression
    Resource Category : Databases -> Human and Other Vertebrate Genomes -> Model Organisms, Comparative Genomics

    Brief Description : BodyMap-Xs (http://bodymap.jp) is a database for cross-species gene expression comparison; it was created by the anatomical breakdown of 17 million animal EST records in DDBJ by using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner; this will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal; this method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically.

    Institute/s :
    Laboratory for Gene-Expression Analysis, Research Organization of Information and Systems, National Institute of Genetics, DNA Data Bank of Japan, Yata 1111, Mishima, Shizuoka 411-8540, Japan
    Country : Japan

    Associated Institutes :

    • Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics 1111 Yata, Mishima, Shizuoka 411-8540, Japan
    • Biological Information Research Center, National Institute of Advanced Industrial Science and Technology (AIST) 2-42 Aomi, Koto, Tokyo 135-0064, Japan 3National Institute of Informatics 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430, Japan

    Associated Country : Japan


    Authors/Contributors : Okubo K.
    Contact Email : kokubo@genes.nig.ac.jp
    Year : 2006
    Language : English

    Keywords : Animal Structures / metabolism; Animals; *Databases, Nucleic Acid; Evolution, Molecular; *Expressed Sequence Tags / chemistry / metabolism; *Gene Expression; Humans; Internet; User-Computer Interface