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  1. AgBase (View Publication)
    Full Name of the Resource : GO annotations for agriculturally important plants and animals
    Resource Category : Databases -> Human and Other Vertebrate Genomes -> Model Organisms, Comparative Genomics

    Brief Description : AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. We have developed a novel method for facilitating structural annotation of genomes, "expressed protein sequence tags" (ePSTs) and these ePSTs are provided through AgBase. We use controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species. We provide tools designed to assist with the analysis of proteomics data and tools to evaluate experimental datasets using the GO.

    Institute/s :
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, USA
    Address of Institute/s :
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, P.O. Box 1600, Mississippi State, MS 39762, USA
    Country : United States

    Associated Institutes :

    • Department of Basic Sciences, College of Veterinary Medicine, P.O. Box 6100
    • Department of Computer Science and Engineering, College of Engineering, P.O. Box 9637
    • Life Sciences and Biotechnology Institute, P.O. Box 6040
    • Department of Plant and Soil Sciences, P.O. Box 9555
    • Mississippi Agricultural and Forestry Experiment Station, P.O. Box 9740, Mississippi State University, MS 39762, USA

    Associated Country : USA


    Authors/Contributors : Fiona M. McCarthy; Cathy R. Gresham; Teresia J. Buza; Philippe Chouvarine; Lakshmi R. Pillai; Ranjit Kumar; Seval Ozkan; Hui Wang; Prashanti Manda; Tony Arick; Susan M. Bridges; Shane C. Burgess
    Contact Email : fmccarthy@cvm.msstate.edu
    Year : 2011
    Language : English