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  1. AGRIS (View Publication)
    Full Name of the Resource : Arabidopsis gene regulatory information server
    Resource Category : Databases -> Plant databases -> Arabidopsis thaliana

    Brief Description : AGRIS is an information resource of Arabidopsis promoter sequences, transcription factors and their target genes. AGRIS currently contains two databases, AtTFDB (Arabidopsis thaliana transcription factor database) and AtcisDB (Arabidopsis thaliana cis-regulatory database). AtTFDB contains information on approximately 1,500 transcription factors identified through motif searches and grouped into families, based on the presence of conserved domains. AtTFDB links the sequence of the transcription factors with available mutants and, when known, with the possible genes they may regulate. AtcisDB consists of the 5' regulatory sequences of all 29,388 annotated genes with a description of the corresponding cis-regulatory elements. Users can search the databases for (i) promoter sequences, (ii) a transcription factor, (iii) a direct target gene for a specific transcription factor, or (vi) a regulatory network that consists of transcription factors and their target genes.
    Subject Area : Arabidopsis Thaliana


    Institute/s :
    Division of Human Cancer Genetics, Comprehensive Cancer Center, Department of Molecular Virology, Immunology and Medical Genetics, Ohio State University, USA
    Address of Institute/s :
    Division of Human Cancer Genetics, Comprehensive Cancer Center, Department of Molecular Virology, Immunology and Medical Genetics, Ohio State University, Columbus, OH 43210, USA
    Country : United States

    Associated Institutes :

    • Division of Human Cancer Genetics, Comprehensive Cancer Center, Department of Molecular Virology, Immunology and Medical Genetics, Ohio State University, Columbus, OH 43210, USA
    • Department of Plant Cellular and Molecular Biology, and Plant Biotechnology Center, The Ohio State University, Columbus, OH 43210, USA

    Associated Country : USA


    Contact Email : Davuluri-1@medctr.osu.edu
    Year : 2003
    Language : English

    Keywords : 3' Untranslated Regions/genetics/physiology; 5' Untranslated Regions/genetics/physiology; Arabidopsis/genetics; Arabidopsis Proteins/genetics/physiology; Computer Graphics/trends; Database Management Systems/trends; Databases, Genetic/trends; Gene Expression Regulation, Plant/genetics/physiology; Genes, Plant/genetics/physiology; Information Systems/trends; Internet; Regulatory Sequences, Nucleic Acid/genetics/physiology; Trans-Activators/genetics/physiology; Transcription Factors/genetics/physiology; User-Computer Interface