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  1. ABS (View Publication)
    Full Name of the Resource : Annotated regulatory binding sites from orthologous promoters
    Resource Category : Databases -> Nucleotide Sequence Databases -> Transcriptional regulator sites and transcription factors

    Brief Description : ABS (Annotated Binding Sites) is a public database of experimentally verified orthologous transcription factor binding sites (TFBSs). Annotations have been collected from the literature and are manually curated. For each gene, the TFBSs conserved in orthologous sequences from at least two different species must be available. Promoter sequences as well as the original GenBank or RefSeq entries are additionally supplied in case of future identification conflicts. The final TSS annotation has been refined using the database dbTSS. Up to this release, 500 bps upstream the annotated transcription start site (TSS) have been always extracted to form the collection of gene promoter sequences from human, mouse, rat and chicken.
    Subject Area : Annotated Binding Sites


    Institute/s :
    Grup de Recerca en Informatica Biomedica, Institut Municipal d'Investigacio Medica/Universitat Pompeu Fabra/Centre de Regulacio Genomica C/Doctor Aiguader Barcelona, Spain
    Address of Institute/s :
    Grup de Recerca en Informatica Biomedica, Institut Municipal d'Investigacio Medica/Universitat Pompeu Fabra/Centre de Regulacio Genomica C/Doctor Aiguader Barcelona, Spain
    Country : Spain

    Associated Institutes :

    • Grup de Recerca en Informatica Biomedica, Institut Municipal d'Investigacio Medica/Universitat Pompeu Fabra/Centre de Regulacio Genomica C/Doctor Aiguader 80, 08003 Barcelona, Spain
    • Grup d'algorismica i genetica, Departament de Llenguatges i Sistemes Informetics, Universitat Politecnica de Catalunya C/Jordi Girona 1-3, 08034 Barcelona, Spain

    Associated Country : Spain


    Authors/Contributors : Enrique Blanco; Domenec Farre; M. Mar Alba; Xavier Messeguer; Roderic Guigo
    Contact Email : eblanco@imim.es
    Year : 2006
    Language : English

    Keywords : Animals; Binding Sites; Chickens / genetics; Databases, Nucleic Acid; Genomics; Humans; Internet; Mice; Promoter Regions, Genetic; Rats; Transcription Factors / metabolism; User-Computer Interface