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Showing search results (101–110 of 182):

  1. MDPD
    Resource Category : Databases -> Human Genes and Diseases -> Gene, system or disease specific databases

    Brief Description : Mutation Database for Parkinson\'s Disease

    Institute/s :
    Institute for Infocomm Research, Singapore
    Address of Institute/s :
    Institute for Infocomm Research, Singapore
    Country : Singapore

    Associated Institutes :

    • Data Mining Department, Institute for Infocomm Research, Agency for Science, Technology and Research, Department of Neurology, Singapore General Hospital, Singapore

    Associated Country : Singapore


    Authors/Contributors : Suisheng Tang; Zhuo Zhang; Gopalakrishnan Kavitha; Eng-King Tan; See Kiong Ng
    Contact Email : suisheng@i2r.a-star.edu.sg
    Year : 2008
    Language : English


  2. MetaBioME
    Resource Category : Databases -> Metabolic and Signaling Pathways -> Enzymes and enzyme nomenclature

    Brief Description : Metagenomic BioMining Engine: homologs of commercially useful enzymes in metagenomic datasets

    Institute/s :
    RIKEN, Yokohama, Kanagawa 230-0045, Japan
    Address of Institute/s :
    RIKEN, Yokohama, Kanagawa 230-0045, Japan
    Country : Japan

    Associated Institutes :

    • MetaSystems Research Team, Computational Systems Biology Research Group, Advanced Computational Sciences Department, Advanced Science Institute, RIKEN, Yokohama, Kanagawa 230-0045, Japan

    Associated Country : Japan


    Authors/Contributors : Vineet K. Sharma; Naveen Kumar; Tulika Prakash; Todd D. Taylor
    Contact Email : taylor@riken.jp
    Year : 2009
    Language : English


  3. MitoMiner
    Resource Category : Databases -> Organelle databases -> Mitochondrial genes and proteins

    Brief Description : Mitochondrial proteomics data

    Institute/s :
    Medical Research Council Mitochondrial Biology Unit, Wellcome Trust/MRC Building, Hills Road, Cambridge CB2 0XY, UK
    Address of Institute/s :
    Medical Research Council Mitochondrial Biology Unit, Wellcome Trust/MRC Building, Hills Road, Cambridge CB2 0XY, UK
    State : Cambridge
    Country : United Kingdom

    Associated Institutes :

    • Medical Research Council Mitochondrial Biology Unit, Wellcome Trust/MRC Building, Hills Road, Cambridge CB2 0XY, UK

    Associated Country : United Kingdom


    Authors/Contributors : Anthony C. Smith; James A. Blackshaw; Alan J. Robinson
    Contact Email : ajr@mrc-mbu.cam.ac.uk
    Year : 2011
    Language : English


  4. MitoZoa
    Resource Category : Databases -> Organelle databases -> Mitochondrial genes and proteins

    Brief Description : Mitochondrial genomes are frequently used in molecular evolution, including molecular systematics and phylogeny studies. In Metazoa, the mitochondrial (mt) genome (1) is of circular shape; it has a genome length ranging ~16-17 kb and a very compact gene organization, i.e., no space between genes, in some cases short overlaps of genes, presence of only one major non-coding region containing, in general, the main regulatory elements. Because of its reduced size the metazoan mt genome can be completely sequenced rather easily, thus making comparative studies possible not only at the gene but also at the genomic level. For these studies a very important prerequisite is the best alignment of the sequences under comparison. The AMmtDB database compiles the Chordata and Invertebrata multi-aligned complete mitochondrial (mt) genes coding for proteins and tRNAs available from public sequence databases (updated at August 2001). These data include genes from 113 Chordata and 47 Invertebrata complete mitochondrial genomes. The genes coding for proteins are multi-aligned based on the translated sequences and both the nucleotide and aminoacid multialignments are provided. The AMmtDB database can be retrieved through SRS and is available via the web site http://bighost.area.ba.cnr.it/mitochondriome where other mitochondrial databases developed by our group, the complete list of the sequenced mitochondrial genomes, and links to other mitochondrial sites and related information are available. Each entry in AMmtDB is related to taxonomic class specific data for the same gene. Because of the variability of the mitochondrial genomes and their usage in diversity studies, data from primary databases reporting sequences from the same species and the same genes have been analysed and grouped in gene and species specific clusters identified by a code; each cluster is stored in a multi-aligned file and the link to this file is available through the AMmtDB entries at the MV line. Further information about the variant clusters is available at the Mitochondriome Web site in the section Databases/VarMmtDB . The data selected through SRS can be viewed and managed using GeneDoc or other programs for the management of multi-aligned data depending on the user\'s operative system.

    Institute/s :
    Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita degli Studi di Milano, Italy
    Address of Institute/s :
    Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita degli Studi di Milano, Italy
    Country : Italy

    Associated Institutes :

    • CASPUR, Consorzio interuniversitario per le Applicazioni di Supercalcolo per Universita e Ricerca, Rome
    • Dipartimento di Biochimica e Biologia Molecolare ‘E. Quagliariello’, Universita degli Studi di Bari, Bari
    • Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita degli Studi di Milano, Milan
    • Istituto di Biomembrane e Bioenergetica, Consiglio Nazionale delle Ricerche, Bari, Italy

    Associated Country : Italy


    Authors/Contributors : Paolo D\'Onorio de Meo; Mattia D\'Antonio; Francesca Griggio; Renato Lupi; Massimiliano Borsani; Giulio Pavesi; Tiziana Castrignano; Graziano Pesole; Carmela Gissi
    Contact Email : carmela.gissi@unimi.it
    Year : 2011
    Language : English


  5. MMCD
    Resource Category : Databases -> Metabolic and Signaling Pathways -> Metabolic pathways

    Brief Description : The most commonly employed analytical tools used in high-throughput metabolic profiling, known as metabolomics or metabonomics, are nuclear magnetic resonance (NMR) and mass spectrometry (MS). However, bioinformatics resources for identifying common metabolites from experimental NMR and MS data have been limited. The Madison Metabolomics Consortium Database (MMCD) is a web-based tool that contains data pertaining to biologically-relevant small molecules from a variety of species. The MMCD contains information on 20,306 metabolites and other small molecules of biological interest. These molecules, which were chosen from entries in KEGG, BioCyc, CHEBI, HMDB, UM-BBD, and PDB, represent a collection of primary and secondary metabolites, xenobiotics, and common small molecule contaminants. A total of 477 small molecule entries contain experimental NMR data from the growing BMRB collection. The MMCD is equipped with a flexible and efficient query system that supports complex queries from any combination of its five basic search engines: text, structure, NMR, mass, and miscellanea. Results returned give users access to all of the MMCD information about a molecule and offer direct links to records in other public databases.

    Institute/s :
    Department of Biochemistry,
    Address of Institute/s :
    University of Wisconsin-Madison, 433 Babcock Drive, Madison WI 53706
    Country : USA

    Associated Institutes :

    • Department of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison WI 53706 USA

    Associated Country : USA


    Authors/Contributors : Cui, Q.; Lewis, I.A.; Hegeman, A.D.; Anderson, M.E.; Li, J.; Schulte, C.F.; Westler, W.M.; Eghbalnia, H.R.; Sussman, M.R.; Markley, J.L.
    Contact Email : cui@nmrfam.wisc.edu
    Year : 2008
    Language : English


  6. MMMDB
    Resource Category : Databases -> Metabolic and Signaling Pathways -> Metabolic pathways

    Brief Description : Mouse Multiple Tissue Metabolomics Database

    Institute/s :
    Keio University, Fujisawa, Kanagawa 252-8520, Japan
    Address of Institute/s :
    Keio University, Fujisawa, Kanagawa 252-8520, Japan
    Country : Japan

    Associated Institutes :

    • Institute for Advanced Biosciences
    • Keio University, Tsuruoka, Yamagata 997-0017
    • Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa 252-8520
    • Graduate School of Medicine and Faculty of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto 606-8501, Japan
    • Department of Food and Applied Life Science, Faculty of Agriculture, Yamagata University, Tsuruoka, Yamagata 997-8555, Japan

    Associated Country : Japan


    Authors/Contributors : Masahiro Sugimoto; Satsuki Ikeda; Kanako Niigata; Masaru Tomita; Hideyo Sato; Tomoyoshi Soga
    Contact Email : msugi@sfc.keio.ac.jp
    Year : 2011
    Language : English


  7. modMine
    Resource Category : Databases -> Microarray Data and other Gene Expression Databases -> Microarray Data and other Gene Expression Databases

    Brief Description : Mining of modENCODE data

    Institute/s :
    Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, United Kingdom
    Address of Institute/s :
    Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, United Kingdom
    State : Cambridge
    Country : United Kingdom

    Associated Institutes :

    • Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK
    • Lawrence Berkeley National Laboratory, Genomics Division, Berkeley, CA 94720, USA
    • Ontario Institute for Cancer Research, MaRS Centre, Toronto, ON, Canada M5G 0A3

    Associated Country : United Kingdom; USA; Canada


    Authors/Contributors : Sergio Contrino; Richard N. Smith; Daniela Butano; Adrian Carr; Fengyuan Hu; Rachel Lyne; Kim Rutherford; Alex Kalderimis; Julie Sullivan; Seth Carbon; Ellen T. Kephart; Paul Lloyd; E. O. Stinson; Nicole L. Washington; Marc D. Perry; Peter Ruzanov; Zheng Zha; Suzanna E. Lewis; Lincoln D. Stein; Gos Micklem
    Contact Email : g.micklem@gen.cam.ac.uk
    Year : 2011
    Language : English


  8. MoKCa
    Resource Category : Databases -> Human Genes and Diseases -> Cancer gene databases

    Brief Description : Mutations of Kinases in Cancer

    Institute/s :
    Institute of Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, United Kingdom
    Address of Institute/s :
    Institute of Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, United Kingdom
    State : London
    Country : United Kingdom

    Associated Institutes :

    • Section of Structural Biology, The Breakthrough Breast Cancer Research Centre
    • Institute of Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, UK

    Associated Country : United Kingdom


    Authors/Contributors : Christopher J. Richardson; Qiong Gao; Costas Mitsopoulous; Marketa Zvelebil; Laurence H. Pearl; Frances M. G. Pearl
    Contact Email : frances.pearl@icr.ac.uk
    Year : 2008
    Language : English


  9. MOPED
    Resource Category : Databases -> Proteomics Resources -> Proteomics Resources

    Brief Description : Model Organism Protein Expression Database

    Institute/s :
    Seattle Children\'s Hospital, Seattle, WA, Israel
    Address of Institute/s :
    Seattle Children\'s Hospital, Seattle, WA, Israel
    Country : Israel

    Associated Institutes :

    • Bioinformatics and High-throughput Analysis Laboratory, High-throughput Analysis Core, Center for Developmental Therapeutics, Seattle Children\'s Research Institute, Predicitive Analytics, Seattle Children\'s Hospital, Seattle, WA, 98105
    • Department of Pediatrics, Department of Medical Education and Biomedical Informatics, University of Washington, Medical School, Seattle, WA, 98101, USA
    • Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, 76100, Israel

    Associated Country : Israel


    Authors/Contributors : Eugene Kolker; Roger Higdon; Winston Haynes; Dean Welch; William Broomall; Doron Lancet; Larissa Stanberry; Natali Kolker
    Contact Email : eugene.kolker@seattlechildrens.org
    Year : 2011
    Language : English


  10. Mousebook
    Resource Category : Databases -> Human and other Vertebrate Genomes -> Model organisms, comparative genomics

    Brief Description : Mutant mouse lines held at MRC Harwell

    Institute/s :
    MRC Harwell, United Kingdom
    Address of Institute/s :
    MRC Harwell, United Kingdom
    Country : United Kingdom

    Associated Institutes :

    • MRC Harwell, Mammalian Genetics Unit and the Mary Lyon Centre, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK

    Associated Country : United Kingdom


    Authors/Contributors : Andrew Blake; Karen Pickford; Simon Greenaway; Steve Thomas; Amanda Pickard; Christine M. Williamson; Niels C. Adams; Alison Walling; Tim Beck; Martin Fray; Jo Peters; Tom Weaver; Steve D. M. Brown; John M. Hancock; Ann-Marie Mallon
    Contact Email : a.mallon@har.mrc.ac.uk
    Year : 2009
    Language : English


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